Rh4DG314900

Very-long-chain 3-oxoacyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001251
Physical Location & Seq
Forward (+)
53770327 .. 53772100
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG314900.1

Sequence Viewer

Length: 774 bp
ATGGCAATGGAATTGGAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGATCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACCGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCGAAGGGTCTTAACCTTGTCCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATACATGAAGAATTTGGTGGAAGAGTCGAGATTAAGAACATGGTGATCGACTTGGCCAAATTGAGCGGCAAGGAAATAGCTAATGCCATAGAGGATGGGATAAGAGGACTAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGGTTACCCTTATGCCAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGTAACTTGGGTGACTAGGGTAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTCTCAATATTAGTTCCAATTCAAGTCAGCTCCCTTCTTTTCCTCTATACACTCTTTATTCTACAACCAAAGCGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGGTTCTCGTTATCCACCTTAGTATTCTTTTTCTTTCTTTTCTCGGGTTAGTATCACAAACCGGTACCTATACTACTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

257

Amino Acids

28.35

Weight (kDa)

8.27

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 230 5.4e-37 short chain dehydrogenase
adh_short_C2 PF13561 54 - 227 1.7e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 2 cut(s) 626, 757
AfeI AGCGCT 1 cut(s) 249
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 1 cut(s) 573
AjnI CCWGG 2 cut(s) 428, 520
AluBI AGCT 4 cut(s) 71, 257, 350, 580
AluI AGCT 4 cut(s) 71, 257, 350, 580
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 734
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 35, 667
ApoI RAATTY 1 cut(s) 281
AsiGI ACCGGT 1 cut(s) 752
Asp718I GGTACC 1 cut(s) 755
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 4 cut(s) 148, 325, 490, 514
AsuII TTCGAA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 734
BalI TGGCCA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 755
BbvI GCAGC 2 cut(s) 47, 679
BccI CCATC 2 cut(s) 84, 359
BciT130I CCWGG 2 cut(s) 430, 522
BfaI CTAG 3 cut(s) 380, 507, 768
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 3 cut(s) 36, 337, 668
BlsI GCNGC 3 cut(s) 37, 338, 669
Bme1390I CCNGG 2 cut(s) 430, 522
BmeT110I CYCGRG 1 cut(s) 734
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 2 cut(s) 430, 522
BmsI GCATC 1 cut(s) 635
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 4 cut(s) 113, 153, 515, 625
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 752
Bse118I RCCGGY 2 cut(s) 158, 752
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 430, 522
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 47, 679
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 752
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 2 cut(s) 159, 753
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 113, 315
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 757
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 158, 752
BssAI RCCGGY 2 cut(s) 158, 752
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 113, 315
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 430, 522
Bst6I CTCTTC 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 110, 710
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 116, 318
BstMBI GATC 2 cut(s) 113, 315
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 430, 522
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 2 cut(s) 428, 520
BstV1I GCAGC 2 cut(s) 47, 679
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 692
Cac8I GCNNGC 1 cut(s) 189
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 2 cut(s) 158, 752
Csp6I GTAC 2 cut(s) 625, 756
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 6 cut(s) 103, 275, 310, 440, 460, 634
CviQI GTAC 2 cut(s) 625, 756
DdeI CTNAG 2 cut(s) 110, 710
DpnI GATC 2 cut(s) 115, 317
DpnII GATC 2 cut(s) 113, 315
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 734
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 428, 520
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 106, 278, 313, 443, 463, 637
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 6 cut(s) 102, 274, 309, 439, 459, 633
Fnu4HI GCNGC 3 cut(s) 36, 337, 668
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 3 cut(s) 36, 337, 668
FspBI CTAG 3 cut(s) 380, 507, 768
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 36, 337, 668
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 1 cut(s) 326
HapII CCGG 2 cut(s) 159, 753
HhaI GCGC 1 cut(s) 250
Hin1II CATG 6 cut(s) 106, 278, 313, 443, 463, 637
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 124, 294
HpaII CCGG 2 cut(s) 159, 753
HphI GGTGA 4 cut(s) 148, 325, 490, 514
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 5 cut(s) 226, 298, 440, 532, 642
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 3 cut(s) 14, 202, 594
HpyCH4V TGCA 3 cut(s) 45, 407, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 110, 710
Hsp92II CATG 6 cut(s) 106, 278, 313, 443, 463, 637
HspAI GCGC 1 cut(s) 248
KpnI GGTACC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 113, 315
LmnI GCTCC 3 cut(s) 488, 545, 585
Lsp1109I GCAGC 2 cut(s) 47, 679
LweI GCATC 1 cut(s) 635
MaeI CTAG 3 cut(s) 380, 507, 768
MaeIII GTNAC 4 cut(s) 154, 416, 493, 502
MalI GATC 2 cut(s) 115, 317
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 113, 315
MboII GAAGA 5 cut(s) 29, 290, 303, 547, 550
MflI RGATCY 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 7 cut(s) 11, 174, 281, 329, 549, 568, 675
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 5 cut(s) 271, 355, 368, 436, 603
Mox20I TGGCCA 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 650
MscI TGGCCA 1 cut(s) 326
MseI TTAA 4 cut(s) 216, 303, 399, 474
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 2 cut(s) 159, 753
MspR9I CCNGG 2 cut(s) 430, 522
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 430, 522
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 113, 315
NlaIII CATG 6 cut(s) 106, 278, 313, 443, 463, 637
NlaIV GGNNCC 1 cut(s) 757
NmuCI GTSAC 2 cut(s) 154, 502
NsiI ATGCAT 1 cut(s) 650
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 3 cut(s) 37, 338, 669
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 428, 520
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 428, 520
PspN4I GGNNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 626, 757
RsaNI GTAC 2 cut(s) 625, 756
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 4 cut(s) 216, 303, 399, 474
SatI GCNGC 3 cut(s) 36, 337, 668
Sau3AI GATC 2 cut(s) 113, 315
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 2 cut(s) 430, 522
SfaNI GCATC 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 128, 168, 530, 640
SmoI CTYRAG 4 cut(s) 128, 168, 530, 640
Sse9I AATT 7 cut(s) 11, 174, 281, 329, 549, 568, 675
SsiI CCGC 1 cut(s) 336
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 3 cut(s) 380, 507, 768
StyD4I CCNGG 2 cut(s) 428, 520
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 4 cut(s) 206, 252, 297, 318
TasI AATT 7 cut(s) 11, 174, 281, 329, 549, 568, 675
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 4 cut(s) 216, 303, 399, 474
Tru9I TTAA 4 cut(s) 216, 303, 399, 474
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 2 cut(s) 154, 502
TseI GCWGC 2 cut(s) 35, 667
Tsp45I GTSAC 2 cut(s) 154, 502
TspDTI ATGAA 6 cut(s) 16, 43, 64, 282, 291, 428
TspRI CASTG 1 cut(s) 692
XapI RAATTY 1 cut(s) 281
XspI CTAG 3 cut(s) 380, 507, 768
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.