FvH4_4g25041

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001251
Physical Location & Seq
Forward (+)
26971041 .. 26977435
6395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25041.t2

Sequence Viewer

Length: 963 bp
ATGGAATTGCAAGAAGCTTTCATTGTCGCAGCAAGTTGTCTAGGCTTCTTCTCTGTTTGCAAGGCTCTGTTCAAGTTTGTGAGATGGATATGGGTCATGTTTCTGAGACCCACCAAGAATCTCAAGAAATATGGATCTTGGGTAATCATCACTGGCTCCACTGATGGGATTGGCAAGGCCCTTGCCTTTAAACTGGCTTCCAAGGGTCTTAACATCGTCTTGGTTGGTCGAAACCCTTCGAAGCTCGAAGCAACCTCCAAAGAAATCCGCGAGAAATACAATCATGAACAAGTGGAAACCAAGAGCATTGTCGTCGACTTGGCCAAAGCTACTGGGGGAGAGATAGCTAGGACTATAGAGGAAGGGATCAAAGGTCTTGATGTTGGTATTTTGATTAATAATGCAGGGATCAATTACCCTTATGCAAGATACTTTCATGAGGTTGATCGGGAGCTGATGGAGAACATGTTAAAGGTGAACATGGAAGCTGTAACTTGGGTAACTAAGGCAGTGCTTCCAGGTATGCTCGAGAAGAAGAAAGGAGCCATTGTCAATATCGGCTCTGCTGCCTCCCAGGATCCTTCTGTGCCCTTGTACACACTTTACGCCGCTACCAAATCGTACATTGAAGTGTTCTCAAGATGCATTCATTTGGAATACAAGCAGTATGGAATTGATATTCAGTGTCAGGTGCCTCGTTTCGTGGGGACGGAGATGACAAAGGATTTGAAGAAGTCAGTTCCCTTGATGATGGTACCAACAGAGAGATTCAGGAAAGCAAGCATTCGATGGATTGGTTATGAGCATCTATGTAATCCCTACTGGTTGCACTCAGTGCAGGGGTTCATAGTACATGCCGCTCCAGATGCATTAGTTAATGCCATCACGTTTTGGATCTGCAGTGGGATCAGAAAGAGAGGCCAAATGAAGGACTCCAGTGCTGTAAAAAGATGCAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

321

Amino Acids

35.99

Weight (kDa)

9.34

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 245 5.9e-44 short chain dehydrogenase
KR PF08659 47 - 219 1.9e-06 KR domain
adh_short_C2 PF13561 54 - 246 1.6e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 754
AccB1I GGYRCC 2 cut(s) 691, 754
AccBSI CCGCTC 1 cut(s) 860
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 270
AciI CCGC 3 cut(s) 268, 609, 858
AclWI GGATC 7 cut(s) 142, 374, 416, 572, 585, 902, 914
AcoI YGGCCR 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 4 cut(s) 596, 623, 756, 852
AfiI CCNNNNNNNGG 2 cut(s) 165, 928
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 73, 629, 730
AjnI CCWGG 2 cut(s) 517, 573
AluBI AGCT 6 cut(s) 17, 244, 329, 347, 454, 488
AluI AGCT 6 cut(s) 17, 244, 329, 347, 454, 488
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 7 cut(s) 142, 374, 416, 572, 585, 902, 914
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 3 cut(s) 177, 321, 919
ApeKI GCWGC 2 cut(s) 29, 566
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 235
Asp718I GGTACC 1 cut(s) 754
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 591
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 2 cut(s) 691, 754
BbvI GCAGC 2 cut(s) 41, 553
BccI CCATC 6 cut(s) 78, 158, 451, 745, 783, 890
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 2 cut(s) 519, 575
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 41, 348
BfmI CTRYAG 2 cut(s) 354, 898
BisI GCNGC 4 cut(s) 30, 567, 609, 858
BlsI GCNGC 4 cut(s) 31, 568, 610, 859
Bme1390I CCNGG 2 cut(s) 519, 575
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 5 cut(s) 157, 544, 579, 693, 756
BmrFI CCNGG 2 cut(s) 519, 575
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 4 cut(s) 632, 814, 856, 941
BmuI ACTGGG 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 846, 919
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 107, 622
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 201, 573
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 534, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 928
Bse1I ACTGG 5 cut(s) 157, 198, 337, 827, 936
BseBI CCWGG 2 cut(s) 519, 575
BseDI CCNNGG 2 cut(s) 201, 573
BseLI CCNNNNNNNGG 2 cut(s) 165, 928
BseMII CTCAG 2 cut(s) 95, 846
BseNI ACTGG 5 cut(s) 157, 198, 337, 827, 936
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 41, 553
BsgI GTGCAG 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 179, 323, 921
BshNI GGYRCC 2 cut(s) 691, 754
BsiHKCI CYCGRG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 2 cut(s) 165, 928
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 2 cut(s) 645, 783
BsnI GGCC 3 cut(s) 179, 323, 921
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 591
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
BspACI CCGC 3 cut(s) 268, 609, 858
BspANI GGCC 3 cut(s) 179, 323, 921
BspCNI CTCAG 2 cut(s) 96, 845
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 2 cut(s) 283, 436
BspLI GGNNCC 5 cut(s) 157, 544, 579, 693, 756
BspMAI CTGCAG 1 cut(s) 902
BspPI GGATC 7 cut(s) 142, 374, 416, 572, 585, 902, 914
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 2 cut(s) 691, 754
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 860
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 5 cut(s) 157, 198, 337, 827, 936
BssECI CCNNGG 2 cut(s) 201, 573
BssMI GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 519, 575
BstAPI GCANNNNNTGC 1 cut(s) 835
BstAUI TGTACA 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 3 cut(s) 104, 504, 832
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 7 cut(s) 137, 369, 411, 448, 580, 897, 909
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
BstMWI GCNNNNNNNGC 2 cut(s) 835, 866
BstNI CCWGG 2 cut(s) 519, 575
BstNSI RCATGY 2 cut(s) 469, 857
BstSCI CCNGG 2 cut(s) 517, 573
BstSFI CTRYAG 2 cut(s) 354, 898
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 41, 553
BstX2I RGATCY 3 cut(s) 134, 577, 894
BstYI RGATCY 3 cut(s) 134, 577, 894
BsuRI GGCC 3 cut(s) 179, 323, 921
BtsI GCAGTG 3 cut(s) 516, 907, 961
BtsIMutI CAGTG 8 cut(s) 150, 159, 516, 689, 840, 907, 943, 961
Cac8I GCNNGC 1 cut(s) 781
CciI TCATGA 2 cut(s) 283, 436
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 4 cut(s) 595, 622, 755, 851
CviAII CATG 6 cut(s) 97, 284, 437, 466, 481, 854
CviQI GTAC 4 cut(s) 595, 622, 755, 851
DdeI CTNAG 3 cut(s) 104, 504, 832
DpnI GATC 7 cut(s) 136, 368, 410, 447, 579, 896, 908
DpnII GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
DraI TTTAAA 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 517, 573
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 2 cut(s) 647, 871
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 6 cut(s) 100, 287, 440, 469, 484, 857
FaqI GGGAC 1 cut(s) 721
FatI CATG 6 cut(s) 96, 283, 436, 465, 480, 853
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 30, 567, 609, 858
Fsp4HI GCNGC 4 cut(s) 30, 567, 609, 858
FspBI CTAG 2 cut(s) 41, 348
GluI GCNGC 4 cut(s) 30, 567, 609, 858
GsuI CTGGAG 2 cut(s) 846, 919
HaeIII GGCC 3 cut(s) 179, 323, 921
Hin1II CATG 6 cut(s) 100, 287, 440, 469, 484, 857
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 3 cut(s) 118, 768, 932
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 316, 478, 597
Hpy188I TCNGA 2 cut(s) 105, 911
Hpy188III TCNNGA 9 cut(s) 124, 284, 377, 437, 449, 529, 639, 772, 863
Hpy8I GTNNAC 3 cut(s) 316, 478, 597
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 246, 356, 591, 922
HpyCH4IV ACGT 1 cut(s) 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 835, 866
HpyF3I CTNAG 3 cut(s) 104, 504, 832
HpySE526I ACGT 1 cut(s) 887
Hsp92II CATG 6 cut(s) 100, 287, 440, 469, 484, 857
KpnI GGTACC 1 cut(s) 758
Kzo9I GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
LmnI GCTCC 4 cut(s) 161, 451, 542, 865
Lsp1109I GCAGC 2 cut(s) 41, 553
LweI GCATC 4 cut(s) 632, 814, 856, 941
MaeI CTAG 2 cut(s) 41, 348
MaeII ACGT 1 cut(s) 887
MaeIII GTNAC 2 cut(s) 490, 499
MalI GATC 7 cut(s) 136, 368, 410, 447, 579, 896, 908
MbiI CCGCTC 1 cut(s) 860
MboI GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
MboII GAAGA 4 cut(s) 40, 544, 547, 742
MflI RGATCY 3 cut(s) 134, 577, 894
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 3 cut(s) 5, 412, 672
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 926
MnlI CCTC 6 cut(s) 265, 352, 433, 580, 705, 911
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 2 cut(s) 647, 871
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 323
MseI TTAA 6 cut(s) 189, 210, 396, 470, 876, 961
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 519, 575
Mva1269I GAATGC 2 cut(s) 645, 783
MvaI CCWGG 2 cut(s) 519, 575
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 835, 866
NdeII GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
NlaIII CATG 6 cut(s) 100, 287, 440, 469, 484, 857
NlaIV GGNNCC 5 cut(s) 157, 544, 579, 693, 756
NsiI ATGCAT 2 cut(s) 647, 871
NspI RCATGY 2 cut(s) 469, 857
NspV TTCGAA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 527
PagI TCATGA 2 cut(s) 283, 436
PciI ACATGT 1 cut(s) 465
PctI GAATGC 2 cut(s) 645, 783
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 118, 768
PkrI GCNGC 4 cut(s) 31, 568, 610, 859
PleI GAGTC 1 cut(s) 926
PpsI GAGTC 1 cut(s) 926
PscI ACATGT 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 517, 573
PspGI CCWGG 2 cut(s) 517, 573
PspN4I GGNNCC 5 cut(s) 157, 544, 579, 693, 756
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 902
PsuI RGATCY 3 cut(s) 134, 577, 894
RsaI GTAC 4 cut(s) 596, 623, 756, 852
RsaNI GTAC 4 cut(s) 595, 622, 755, 851
RseI CAYNNNNRTG 1 cut(s) 629
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 6 cut(s) 189, 210, 396, 470, 876, 961
SatI GCNGC 4 cut(s) 30, 567, 609, 858
Sau3AI GATC 7 cut(s) 134, 366, 408, 445, 577, 894, 906
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 2 cut(s) 519, 575
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 4 cut(s) 632, 814, 856, 941
SfcI CTRYAG 2 cut(s) 354, 898
Sfr274I CTCGAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 3 cut(s) 122, 527, 637
SmoI CTYRAG 3 cut(s) 122, 527, 637
Sse9I AATT 3 cut(s) 5, 412, 672
SsiI CCGC 3 cut(s) 268, 609, 858
SspMI CTAG 2 cut(s) 41, 348
StyD4I CCNGG 2 cut(s) 517, 573
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 890
TaqI TCGA 6 cut(s) 229, 239, 246, 315, 528, 787
TasI AATT 3 cut(s) 5, 412, 672
TatI WGTACW 2 cut(s) 594, 850
TauI GCSGC 2 cut(s) 611, 860
TfiI GAWTC 2 cut(s) 118, 768
Tru1I TTAA 6 cut(s) 189, 210, 396, 470, 876, 961
Tru9I TTAA 6 cut(s) 189, 210, 396, 470, 876, 961
TscAI CASTG 8 cut(s) 157, 166, 516, 689, 840, 907, 943, 961
TseI GCWGC 2 cut(s) 29, 566
TspDTI ATGAA 6 cut(s) 10, 300, 425, 638, 835, 941
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 8 cut(s) 157, 166, 516, 689, 840, 907, 943, 961
VspI ATTAAT 1 cut(s) 396
XceI RCATGY 2 cut(s) 469, 857
XhoI CTCGAG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 41, 348
Zsp2I ATGCAT 2 cut(s) 647, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.