Rorug04G0255000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001251
Physical Location & Seq
Forward (+)
42770027 .. 42770792
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0255000.1

Sequence Viewer

Length: 648 bp
ATGTGTCAGAAAGGAGGAAAAACAGCCAATTCTGCTTCGAAAAAGAAGAGGGATGAGTTGGACAAAATAAGCAACTTACCCAGTGGTGTTACACAACAAATCTTGTCATTTTTGCCCATCAGGGAGGCAGTGAGGACAAGTATTTTATCAAGCAACTGGAGGCACAAATGGGCTATGGTTCGGCATCTTGTGTTCGATGATCAATGTGTTTCGGATATGATGAGAGGTGGTATAAAGAGGACGAAAACATTTGAGAATATTGTTGATCATGTTCTCTTACTTCATTCTGGTTCCATAGACACTTGCAAGCTTTCCAGTCGAATTTATCTTATTGAAAGCAGTAATTTGACTCACTTAGAGCTATACAATTGTTTGCTAAAACCCCCTGTGACGTTCAACGGCTTCCCGAGACTGAAGAGCCTCGAAATTCAAAATGTTACTGTGGCGCAAGGTGTGTTGGAAAAGGTGATCATTTGCTGTCCTCTACTTGAGAGATTGACTCTATGTGACTTAAGGAGTATCACCCATCTCAACATTGACGCACCAAATCTTCAATTCCTTAATGTTGGAGGTGGTTTTCAGAGTTTTAAACTTAAGAACACCCCAAATCTTGTTGGTATGGAAGTAACAGGCTTCCGTGGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

215

Amino Acids

24.08

Weight (kDa)

9.35

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 61 1.2e-06 F-box domain
LRR_At5g56370 PF24758 104 - 204 7.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 113 - 193 7e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 321, 426
AcuI CTGAAG 1 cut(s) 434
AflII CTTAAG 2 cut(s) 511, 593
AgsI TTSAA 4 cut(s) 335, 397, 431, 554
AluBI AGCT 2 cut(s) 310, 361
AluI AGCT 2 cut(s) 310, 361
Alw26I GTCTC 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 406
ApoI RAATTY 2 cut(s) 321, 426
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 478, 514
AsuII TTCGAA 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 406
BccI CCATC 2 cut(s) 125, 534
BceAI ACGGC 1 cut(s) 415
BclI TGATCA 3 cut(s) 199, 265, 468
BcoDI GTCTC 1 cut(s) 403
BfrI CTTAAG 2 cut(s) 511, 593
BmeT110I CYCGRG 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpmI CTGGAG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 637
Bse1I ACTGG 3 cut(s) 81, 161, 315
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 1 cut(s) 58
BseNI ACTGG 3 cut(s) 81, 161, 315
BsiHKCI CYCGRG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 38
Bsp143I GATC 3 cut(s) 199, 265, 468
BspLI GGNNCC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 38
BspTI CTTAAG 2 cut(s) 511, 593
BsrI ACTGG 3 cut(s) 81, 161, 315
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 3 cut(s) 199, 265, 468
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 41, 410
BstAFI CTTAAG 2 cut(s) 511, 593
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 202, 268, 471
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 3 cut(s) 199, 265, 468
BstMWI GCNNNNNNNGC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 637
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 88, 135
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 448
CseI GACGC 1 cut(s) 548
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 26, 173, 310, 361, 402, 420, 633
CviKI_1 RGCY 7 cut(s) 26, 173, 310, 361, 402, 420, 633
DdeI CTNAG 1 cut(s) 355
DpnI GATC 3 cut(s) 201, 267, 470
DpnII GATC 3 cut(s) 199, 265, 468
DraI TTTAAA 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 41, 410
EarI CTCTTC 2 cut(s) 41, 410
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 406
FaeI CATG 1 cut(s) 272
FaiI YATR 8 cut(s) 176, 218, 233, 270, 296, 364, 505, 620
FatI CATG 1 cut(s) 268
FbaI TGATCA 3 cut(s) 199, 265, 468
FokI GGATG 1 cut(s) 65
GlaI GCGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 178
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 448
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 349, 499
HphI GGTGA 2 cut(s) 478, 514
Hpy188I TCNGA 3 cut(s) 9, 214, 582
Hpy188III TCNNGA 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 355
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 446
Ksp22I TGATCA 3 cut(s) 199, 265, 468
Kzo9I GATC 3 cut(s) 199, 265, 468
LguI GCTCTTC 1 cut(s) 410
LpnPI CCDG 7 cut(s) 94, 106, 142, 273, 328, 399, 615
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 5 cut(s) 88, 388, 436, 506, 625
MalI GATC 3 cut(s) 201, 267, 470
MboI GATC 3 cut(s) 199, 265, 468
MboII GAAGA 3 cut(s) 58, 427, 542
MfeI CAATTG 1 cut(s) 367
MluCI AATT 6 cut(s) 28, 321, 343, 367, 426, 554
MlyI GAGTC 2 cut(s) 343, 493
MmeI TCCRAC 3 cut(s) 39, 438, 547
MseI TTAA 4 cut(s) 512, 561, 588, 594
MspCI CTTAAG 2 cut(s) 511, 593
MunI CAATTG 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 3 cut(s) 199, 265, 468
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 388, 506
NspV TTCGAA 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 410
PleI GAGTC 2 cut(s) 343, 493
PpsI GAGTC 2 cut(s) 343, 493
PspN4I GGNNCC 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 512, 561, 588, 594
Sau3AI GATC 3 cut(s) 199, 265, 468
SchI GAGTC 2 cut(s) 343, 493
SetI ASST 7 cut(s) 229, 312, 363, 395, 454, 468, 574
SfaNI GCATC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 38
SmlI CTYRAG 3 cut(s) 488, 511, 593
SmoI CTYRAG 3 cut(s) 488, 511, 593
Sse9I AATT 6 cut(s) 28, 321, 343, 367, 426, 554
SspI AATATT 1 cut(s) 259
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 395
TaqI TCGA 4 cut(s) 38, 195, 319, 423
TasI AATT 6 cut(s) 28, 321, 343, 367, 426, 554
Tru1I TTAA 4 cut(s) 512, 561, 588, 594
Tru9I TTAA 4 cut(s) 512, 561, 588, 594
TscAI CASTG 2 cut(s) 88, 135
TseFI GTSAC 2 cut(s) 388, 506
Tsp45I GTSAC 2 cut(s) 388, 506
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 88, 135
Vha464I CTTAAG 2 cut(s) 511, 593
XapI RAATTY 2 cut(s) 321, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.