RchiOBHm_Chr4g0432111

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001251
Physical Location & Seq
Forward (+)
56273537 .. 56274740
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40075

Sequence Viewer

Length: 945 bp
ATGGAGCTACAAGAGTTTTTCATTGTGGCAGCAATCACCATAGGTTTCCTATCTGTTTGTAAATCTTTGATCAATTTTGTGAGATGGGTATGGGTCATGTTTTTAAGACCTCCAAGGAATCTCAAGGAGTATGGATCTTGGGCAATCATCACTGGCTCCACTGATGGAATAGGCAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTTAACCTTGTCTTGGTCGGTCGAAACCCTTCGAAGCTCGAAGCTACCTCTAATGGAATCCGCGGGAAATACTTTCATGAACAAGTGAAAGTTAAGAGCATTGTCATCGACTTGGCAAAATTGAGTGGGGAAGAGATAGCTAGAACCATAGAGGAAGGCATCAAAGGGCTTGATGTTGGTATTTTGATTAACAATGCAGGGATGACTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTTGGAGCTGATGGAGGGCATTACAAAGGTGAACATGGAAGCCCCAAGTTGGGTGACTAGGGCAGTGCTTCCCGGTATGCTCAAGAAGAAGAAAGGAGCAATTATCAATATCGGCTCTGATTTATCCGAGGACCCTTCTTTGCCTCTATACACTCTTTATGCTGCTTCTAAATCGTACCTTAAAATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCATGGAATTGACATTCAGTGTCAGGCACCTCGTTTTGTATCGACCGAGATGACAAAGAATTTGAAGTCACTTCCAGTTCCCTTGTTGATTGCATCACTAGAGAAATTCAGCAAAGCCAGCATCCGATGGATTGGCTATGACCATCTATGCAATCCTTACTGGTCGCATTCAGTGCAGGGGTTCATGATACATGCCTGTCCTGATGTTTTGATTAATGCCCTCTCCTTTTGGATGTGTAGCACCGTCAGAAAGAGAGGCCAAATGAAGGAGAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

35.32

Weight (kDa)

9.25

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 244 4.2e-40 short chain dehydrogenase
adh_short_C2 PF13561 54 - 245 8.1e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 691
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 268, 270
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 724, 770
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 4 cut(s) 220, 495, 496, 931
AgsI TTSAA 3 cut(s) 191, 201, 730
AluBI AGCT 5 cut(s) 7, 244, 251, 347, 454
AluI AGCT 5 cut(s) 7, 244, 251, 347, 454
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 922
ApeKI GCWGC 3 cut(s) 29, 608, 664
ApoI RAATTY 2 cut(s) 724, 770
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AseI ATTAAT 1 cut(s) 879
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 28, 487, 511
AsuII TTCGAA 1 cut(s) 239
AvaII GGWCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 691
BbvI GCAGC 3 cut(s) 41, 595, 676
BccI CCATC 5 cut(s) 78, 158, 451, 786, 816
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 519
BfaI CTAG 3 cut(s) 348, 504, 764
BisI GCNGC 3 cut(s) 30, 609, 665
BlsI GCNGC 3 cut(s) 31, 610, 666
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 3 cut(s) 157, 579, 693
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 375, 632, 767, 795
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 3 cut(s) 107, 512, 622
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 113, 268, 573
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 495, 496, 931
Bse1I ACTGG 3 cut(s) 157, 740, 830
BseDI CCNNGG 3 cut(s) 113, 268, 573
BseGI GGATG 3 cut(s) 414, 786, 903
BseLI CCNNNNNNNGG 4 cut(s) 220, 495, 496, 931
BseNI ACTGG 3 cut(s) 157, 740, 830
BseXI GCAGC 3 cut(s) 41, 595, 676
BsgI GTGCAG 1 cut(s) 860
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 2 cut(s) 229, 711
BshFI GGCC 1 cut(s) 924
BshNI GGYRCC 1 cut(s) 691
BsiEI CGRYCG 2 cut(s) 229, 711
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 4 cut(s) 220, 495, 496, 931
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 1 cut(s) 924
Bsp119I TTCGAA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 69, 134
BspACI CCGC 2 cut(s) 268, 270
BspANI GGCC 1 cut(s) 924
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 3 cut(s) 283, 436, 849
BspLI GGNNCC 3 cut(s) 157, 579, 693
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 691
BsrI ACTGG 3 cut(s) 157, 740, 830
BssECI CCNNGG 3 cut(s) 113, 268, 573
BssMI GATC 2 cut(s) 69, 134
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 838
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 784
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 414, 786, 903
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 72, 137
BstMBI GATC 2 cut(s) 69, 134
BstMCI CGRYCG 2 cut(s) 229, 711
BstMWI GCNNNNNNNGC 2 cut(s) 783, 838
BstNSI RCATGY 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 517
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 41, 595, 676
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 1 cut(s) 924
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 3 cut(s) 414, 786, 903
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 5 cut(s) 150, 159, 516, 689, 843
Cac8I GCNNGC 1 cut(s) 784
CciI TCATGA 3 cut(s) 283, 436, 849
Cfr13I GGNCC 1 cut(s) 577
Cfr42I CCGCGG 1 cut(s) 271
Csp6I GTAC 1 cut(s) 622
CviAII CATG 7 cut(s) 97, 284, 437, 481, 668, 850, 857
CviQI GTAC 1 cut(s) 622
DpnI GATC 2 cut(s) 71, 136
DpnII GATC 2 cut(s) 69, 134
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 7 cut(s) 100, 287, 440, 484, 671, 853, 860
FatI CATG 7 cut(s) 96, 283, 436, 480, 667, 849, 856
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 30, 609, 665
FokI GGATG 3 cut(s) 421, 773, 910
Fsp4HI GCNGC 3 cut(s) 30, 609, 665
FspBI CTAG 3 cut(s) 348, 504, 764
GluI GCNGC 3 cut(s) 30, 609, 665
HaeIII GGCC 1 cut(s) 924
HapII CCGG 1 cut(s) 519
Hin1II CATG 7 cut(s) 100, 287, 440, 484, 671, 853, 860
HinfI GANTC 2 cut(s) 118, 264
HpaII CCGG 1 cut(s) 519
HphI GGTGA 3 cut(s) 28, 487, 511
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 4 cut(s) 565, 574, 791, 914
Hpy188III TCNNGA 6 cut(s) 284, 437, 529, 639, 850, 866
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 4 cut(s) 246, 356, 591, 925
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4V TGCA 6 cut(s) 404, 425, 645, 758, 816, 841
HpyF10VI GCNNNNNNNGC 2 cut(s) 783, 838
Hsp92II CATG 7 cut(s) 100, 287, 440, 484, 671, 853, 860
Ksp22I TGATCA 1 cut(s) 69
KspI CCGCGG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 69, 134
LmnI GCTCC 4 cut(s) 4, 161, 451, 542
Lsp1109I GCAGC 3 cut(s) 41, 595, 676
LweI GCATC 4 cut(s) 375, 632, 767, 795
MaeI CTAG 3 cut(s) 348, 504, 764
MaeIII GTNAC 2 cut(s) 499, 732
MalI GATC 2 cut(s) 71, 136
MboI GATC 2 cut(s) 69, 134
MboII GAAGA 3 cut(s) 350, 544, 547
MflI RGATCY 1 cut(s) 134
MluCI AATT 6 cut(s) 73, 326, 546, 672, 724, 770
Mph1103I ATGCAT 1 cut(s) 647
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 6 cut(s) 104, 210, 300, 396, 627, 879
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 832
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 783, 838
NciI CCSGG 1 cut(s) 519
NdeII GATC 2 cut(s) 69, 134
NlaIII CATG 7 cut(s) 100, 287, 440, 484, 671, 853, 860
NlaIV GGNNCC 3 cut(s) 157, 579, 693
NmuCI GTSAC 2 cut(s) 499, 732
NsiI ATGCAT 1 cut(s) 647
NspI RCATGY 1 cut(s) 860
NspV TTCGAA 1 cut(s) 239
PagI TCATGA 3 cut(s) 283, 436, 849
PctI GAATGC 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 118, 264
PkrI GCNGC 3 cut(s) 31, 610, 666
PpuMI RGGWCCY 1 cut(s) 577
PshBI ATTAAT 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 157, 579, 693
PspPI GGNCC 1 cut(s) 577
PspPPI RGGWCCY 1 cut(s) 577
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SacII CCGCGG 1 cut(s) 271
SaqAI TTAA 6 cut(s) 104, 210, 300, 396, 627, 879
SatI GCNGC 3 cut(s) 30, 609, 665
Sau3AI GATC 2 cut(s) 69, 134
Sau96I GGNCC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 519
SfaNI GCATC 4 cut(s) 375, 632, 767, 795
Sfr303I CCGCGG 1 cut(s) 271
SfuI TTCGAA 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 3 cut(s) 122, 527, 637
SmoI CTYRAG 3 cut(s) 122, 527, 637
Sse9I AATT 6 cut(s) 73, 326, 546, 672, 724, 770
SsiI CCGC 2 cut(s) 268, 270
SspMI CTAG 3 cut(s) 348, 504, 764
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 910
TaqI TCGA 5 cut(s) 229, 239, 246, 315, 707
TaqII GACCGA 2 cut(s) 215, 725
TasI AATT 6 cut(s) 73, 326, 546, 672, 724, 770
TfiI GAWTC 2 cut(s) 118, 264
Tru1I TTAA 6 cut(s) 104, 210, 300, 396, 627, 879
Tru9I TTAA 6 cut(s) 104, 210, 300, 396, 627, 879
TscAI CASTG 5 cut(s) 157, 166, 516, 689, 843
TseFI GTSAC 2 cut(s) 499, 732
TseI GCWGC 3 cut(s) 29, 608, 664
Tsp45I GTSAC 2 cut(s) 499, 732
TspDTI ATGAA 6 cut(s) 10, 272, 300, 425, 838, 944
TspRI CASTG 5 cut(s) 157, 166, 516, 689, 843
VpaK11BI GGWCC 1 cut(s) 577
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 2 cut(s) 724, 770
XceI RCATGY 1 cut(s) 860
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 3 cut(s) 348, 504, 764
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.