Rmu_sc0004965.1_g000028

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004965.1
OG0001251
Physical Location & Seq
Forward (+)
170840 .. 175084
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004965.1_g000028.1.cds

Sequence Viewer

Length: 972 bp
atggaattgcaagaaggtttcattgtagcagcaagttgcataggcttcatctctgtttgtaaagctttcatcaactttctgagatgggtatgggtcatgtttctgagatccccaaagaatctcaaggactatggctcttgggctatcgtcaccggctctgctcaaggaattggcaaagtgcttgccttggagttggcttcgaagggtctaaaccttgtcctgattgataaaaaccattcagcgctcgaagctacctccaatgaaatacatgaagaatttggtggaagagtcgagattaagaacatggtgatcgacttggccaaattgagcggcgaggaaatagctaatgccatagaggaagggataagaggactagatgttggtgttttgattaacaatgcagggataggttacccttatgccaggttttttcatgaggttgatttggaactcatggagaatattattaaggtgaacttgggagcagtatcttgggtgactagagtagtgcttccaggaatgctcaagaagaagaaaggagcaattctcaatattagttccaattcaactcagctcccttcttttcctctatacactctttattctacaaccaaagcgtacatttccatgttctcaagatgcattagtttggaatacaagcagcatggaattgacattcagtgtcagattccttttttcgtggcaacgagtttgacaaaacatttgaggggactttcctggtttatggcatcgccagagaaatttagcaaagcaagcgttcgctggattggttatgagcctgtgtgtaacccctactggtggcactctgtgcagtggttcataatacgtgtggcctcaccggatgtgttattgaatgccatcatttactggatctgcattcgggtcagaaagagaggccaaatgaaggaggcacagagcaagaagatgcatcaacaggaaattgcattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

323

Amino Acids

36.45

Weight (kDa)

9.11

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 1 cut(s) 330
AclWI GGATC 2 cut(s) 102, 899
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 275, 761
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 1 cut(s) 620
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 819, 925
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 2 cut(s) 567, 874
AjnI CCWGG 3 cut(s) 422, 514, 737
AluBI AGCT 4 cut(s) 65, 251, 344, 574
AluI AGCT 4 cut(s) 65, 251, 344, 574
AlwI GGATC 2 cut(s) 102, 899
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 3 cut(s) 318, 852, 916
ApeKI GCWGC 2 cut(s) 29, 661
ApoI RAATTY 2 cut(s) 275, 761
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
AspLEI GCGC 1 cut(s) 244
AsuHPI GGTGA 5 cut(s) 142, 319, 484, 508, 849
AsuII TTCGAA 1 cut(s) 200
BalI TGGCCA 1 cut(s) 320
BbvI GCAGC 2 cut(s) 41, 673
BccI CCATC 2 cut(s) 78, 887
BciT130I CCWGG 3 cut(s) 424, 516, 739
BfaI CTAG 2 cut(s) 374, 501
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 3 cut(s) 30, 331, 662
BlsI GCNGC 3 cut(s) 31, 332, 663
Bme1390I CCNGG 3 cut(s) 424, 516, 739
BmrFI CCNGG 3 cut(s) 424, 516, 739
BmsI GCATC 4 cut(s) 629, 758, 936, 958
BplI GAGNNNNNCTC 2 cut(s) 531, 563
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 4 cut(s) 107, 147, 509, 619
BsaAI YACGTR 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 859
Bsc4I CCNNNNNNNGG 2 cut(s) 819, 925
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 821, 893
BseBI CCWGG 3 cut(s) 424, 516, 739
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 868
BseLI CCNNNNNNNGG 2 cut(s) 819, 925
BseMII CTCAG 3 cut(s) 71, 95, 584
BseNI ACTGG 2 cut(s) 821, 893
BseXI GCAGC 2 cut(s) 41, 673
BsgI GTGCAG 1 cut(s) 851
BshFI GGCC 3 cut(s) 320, 854, 918
BsiSI CCGG 2 cut(s) 153, 860
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 2 cut(s) 819, 925
BsmFI GGGAC 1 cut(s) 744
BsmI GAATGC 3 cut(s) 525, 880, 897
BsnI GGCC 3 cut(s) 320, 854, 918
Bsp119I TTCGAA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 107, 309, 891
BspACI CCGC 1 cut(s) 330
BspANI GGCC 3 cut(s) 320, 854, 918
BspCNI CTCAG 3 cut(s) 72, 96, 583
BspHI TCATGA 1 cut(s) 433
BspPI GGATC 2 cut(s) 102, 899
BspT104I TTCGAA 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 821, 893
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 107, 309, 891
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 424, 516, 739
Bst6I CTCTTC 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 829
BstBAI YACGTR 1 cut(s) 848
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 183, 775
BstDEI CTNAG 3 cut(s) 80, 104, 570
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 1 cut(s) 868
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 3 cut(s) 110, 312, 894
BstMBI GATC 3 cut(s) 107, 309, 891
BstMWI GCNNNNNNNGC 3 cut(s) 248, 774, 829
BstNI CCWGG 3 cut(s) 424, 516, 739
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 422, 514, 737
BstV1I GCAGC 2 cut(s) 41, 673
BstX2I RGATCY 2 cut(s) 107, 891
BstYI RGATCY 2 cut(s) 107, 891
BsuRI GGCC 3 cut(s) 320, 854, 918
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 1 cut(s) 868
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 2 cut(s) 686, 839
Cac8I GCNNGC 2 cut(s) 183, 775
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 152
Csp6I GTAC 1 cut(s) 619
CviAII CATG 7 cut(s) 97, 269, 304, 434, 454, 628, 665
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 3 cut(s) 80, 104, 570
DpnI GATC 3 cut(s) 109, 311, 893
DpnII GATC 3 cut(s) 107, 309, 891
DraIII CACNNNGTG 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 422, 514, 737
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 2 cut(s) 644, 951
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 7 cut(s) 100, 272, 307, 437, 457, 631, 668
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 744
FatI CATG 7 cut(s) 96, 268, 303, 433, 453, 627, 664
Fnu4HI GCNGC 3 cut(s) 30, 331, 662
FokI GGATG 1 cut(s) 875
Fsp4HI GCNGC 3 cut(s) 30, 331, 662
FspBI CTAG 2 cut(s) 374, 501
GlaI GCGC 1 cut(s) 243
GluI GCNGC 3 cut(s) 30, 331, 662
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 3 cut(s) 320, 854, 918
HapII CCGG 2 cut(s) 153, 860
HhaI GCGC 1 cut(s) 244
Hin1II CATG 7 cut(s) 100, 272, 307, 437, 457, 631, 668
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 118, 288, 688
HpaII CCGG 2 cut(s) 153, 860
HphI GGTGA 5 cut(s) 142, 319, 484, 508, 849
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 4 cut(s) 81, 105, 687, 908
Hpy188III TCNNGA 5 cut(s) 220, 292, 434, 526, 636
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 5 cut(s) 8, 196, 353, 588, 919
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 8 cut(s) 10, 39, 401, 642, 832, 897, 949, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 774, 829
HpyF3I CTNAG 3 cut(s) 80, 104, 570
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 7 cut(s) 100, 272, 307, 437, 457, 631, 668
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 3 cut(s) 107, 309, 891
LmnI GCTCC 3 cut(s) 482, 539, 579
Lsp1109I GCAGC 2 cut(s) 41, 673
LweI GCATC 4 cut(s) 629, 758, 936, 958
MaeI CTAG 2 cut(s) 374, 501
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 4 cut(s) 148, 410, 496, 806
MalI GATC 3 cut(s) 109, 311, 893
MbiI CCGCTC 1 cut(s) 330
MboI GATC 3 cut(s) 107, 309, 891
MboII GAAGA 5 cut(s) 284, 297, 541, 544, 955
MflI RGATCY 2 cut(s) 107, 891
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 9 cut(s) 5, 168, 275, 323, 543, 562, 669, 761, 960
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 1 cut(s) 297
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 2 cut(s) 644, 951
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 297, 393, 468
MslI CAYNNNNRTG 1 cut(s) 626
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 2 cut(s) 153, 860
MspR9I CCNGG 3 cut(s) 424, 516, 739
Mva1269I GAATGC 3 cut(s) 525, 880, 897
MvaI CCWGG 3 cut(s) 424, 516, 739
MwoI GCNNNNNNNGC 3 cut(s) 248, 774, 829
NdeII GATC 3 cut(s) 107, 309, 891
NlaIII CATG 7 cut(s) 100, 272, 307, 437, 457, 631, 668
NmuCI GTSAC 2 cut(s) 148, 496
NsiI ATGCAT 2 cut(s) 644, 951
NspV TTCGAA 1 cut(s) 200
PagI TCATGA 1 cut(s) 433
PctI GAATGC 3 cut(s) 525, 880, 897
PfeI GAWTC 2 cut(s) 118, 688
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 3 cut(s) 31, 332, 663
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 848
Psp6I CCWGG 3 cut(s) 422, 514, 737
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 3 cut(s) 422, 514, 737
PsuI RGATCY 2 cut(s) 107, 891
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 626
SaqAI TTAA 3 cut(s) 297, 393, 468
SatI GCNGC 3 cut(s) 30, 331, 662
Sau3AI GATC 3 cut(s) 107, 309, 891
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 3 cut(s) 424, 516, 739
SfaNI GCATC 4 cut(s) 629, 758, 936, 958
SfuI TTCGAA 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 4 cut(s) 122, 162, 524, 634
SmoI CTYRAG 4 cut(s) 122, 162, 524, 634
Sse9I AATT 9 cut(s) 5, 168, 275, 323, 543, 562, 669, 761, 960
SsiI CCGC 1 cut(s) 330
SspI AATATT 2 cut(s) 463, 553
SspMI CTAG 2 cut(s) 374, 501
StyD4I CCNGG 3 cut(s) 422, 514, 737
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 850
TaqI TCGA 4 cut(s) 200, 246, 291, 312
TasI AATT 9 cut(s) 5, 168, 275, 323, 543, 562, 669, 761, 960
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 118, 688
Tru1I TTAA 3 cut(s) 297, 393, 468
Tru9I TTAA 3 cut(s) 297, 393, 468
TscAI CASTG 2 cut(s) 686, 839
TseFI GTSAC 2 cut(s) 148, 496
TseI GCWGC 2 cut(s) 29, 661
Tsp45I GTSAC 2 cut(s) 148, 496
TspDTI ATGAA 8 cut(s) 10, 37, 58, 276, 285, 422, 829, 938
TspRI CASTG 2 cut(s) 686, 839
XapI RAATTY 2 cut(s) 275, 761
XspI CTAG 2 cut(s) 374, 501
Zsp2I ATGCAT 2 cut(s) 644, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.