Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001251

Physical Location & Seq

Genomic Coordinates Reverse (-)

7516275 .. 7518412

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1107200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAATTCCAACAGTTTTTCCTAGTGGCAGTAAGCACTCTAGGGTTCATCTCTCTCTGCAAATCCTTCATCAACTTTCTCAGATGGGTCTGGCTCATGTTCCTCAGACCCCCAAAGAATCTCAAGGAGTACGGCTCGTGGGCTCTCATCACTGGCCCCACTGACGGAATCGGAAAAGCCCTAGCATTCCAAATGGCTTCGAAGGGTCTTAACCTAGTTTTGGTTGGTCGAAACCCTTCGAAGCTCGTAGCAACCTCCAACGAAATACACGAGAAGTACGGTGAAAAAATTCACACCAAGAATATTGCCATTGATTTGGCACAGTTTACTGGGCAGGAAATTGCTGATGCGATAGAGGAAGGAATAAAAGGGCTTGATGTGGCCATTTTGGTAAATAATGCTGGGGTGGCTTACCCTTATGCAAGGTTTTTTCATGAGGTTGATTTGGAGCTGATGGAGAGCATTGTGAAGGTGAACATGGAGGCTGCCACGTGGATCACTAGGGCAGTGCTTCCAGCTATGCTGAGGAAGAAGAAGGGAGCAATTGTTAACATTGGTTCTGCCTCCTCTGAGACCCTCCCTTCTTACCCTCTATACACTGTTTATGCTGCATCCAAAGCGTACATATCAATGTTCTCAAAATGCATTAGTTTGGAGTACAAGCAGCAAGGAATTGACATTCAGTGCCAGATTCCTAGTTTGGTGGCAACAAAGATGACAAAGATGAAGCCAACTTCCTTCTTCATTGCATCACCAGAGATGTATAGCAAAGCAAGCATGAGATGCATTGGTTATGAGCATCTGTGCACCCCCTACTTGAGCCATTCTGTGCAGTGGTTCATAACAAATGCACTGCCTGATGTTTTGTTGAATGCGATCATGTTGAAGTATTTTATTGGGATGCGAAAGAGAGGCCAATTGAAGGAGTCGCGAAACAAAGCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

316

Amino Acids

35.3

Weight (kDa)

9.32

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	47 - 242	2.2e-41	short chain dehydrogenase
adh_short_C2	PF13561	55 - 243	7.3e-25	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25000 FvH4_4g25000 FvH4_4g25020 FvH4_4g25030 FvH4_4g25040 FvH4_4g25041 FvH4_4g25043
malus_domestica	MD13G1107300.v1.1 MD13G1107400.v1.1 MD16G1107200.v1.1 MD16G1107300.v1.1
prunus_persica	Prupe.1G239100_v2.0.a1 Prupe.1G239200_v2.0.a1
pyrus_communis	pycom13g09290 pycom16g09130
rosa_chinensis	RchiOBHm_Chr4g0432081 RchiOBHm_Chr4g0432091 RchiOBHm_Chr4g0432111 RchiOBHm_Chr4g0432131 RchiOBHm_Chr4g0432141 RchiOBHm_Chr4g0432151 RchiOBHm_Chr4g0432161 RchiOBHm_Chr4g0432171 RchiOBHm_Chr4g0432201
rosa_laevigata	RLG00000006862 RLG00000006863 RLG00000006864 RLG00000006865
rosa_multiflora	Rmu_sc0000285.1_g000006 Rmu_sc0000285.1_g000015 Rmu_sc0004965.1_g000028
rosa_roxburghii	Rroxscaffold_5G00373620 Rroxscaffold_5G00373630
rosa_rugosa	Rorug04G0254500 Rorug04G0254600 Rorug04G0254700 Rorug04G0254800 Rorug04G0254900 Rorug04G0255000 Rorug04G0255100 Rorug04G0255200
rosa_samantha	Rh4AG311900 Rh4AG312000 Rh4AG312100 Rh4AG312200 Rh4BG319100 Rh4BG319500 Rh4BG319700 Rh4CG334600 Rh4DG314700 Rh4DG314900 Rh4DG315200
rosa_wichuraiana	Rw4G027120 Rw4G027130 Rw4G027140 Rw4G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	931
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	5, 288
AcvI	CACGTG	1 cut(s)	492
AfaI	GTAC	4 cut(s)	131, 278, 623, 659
AfiI	CCNNNNNNNGG	3 cut(s)	164, 220, 922
AgsI	TTSAA	3 cut(s)	871, 886, 922
AluBI	AGCT	3 cut(s)	244, 451, 518
AluI	AGCT	3 cut(s)	244, 451, 518
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	1 cut(s)	566
Alw44I	GTGCAC	1 cut(s)	805
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	3 cut(s)	154, 381, 913
ApaLI	GTGCAC	1 cut(s)	805
ApeKI	GCWGC	3 cut(s)	485, 608, 664
ApoI	RAATTY	2 cut(s)	5, 288
Asp700I	GAANNNNTTC	2 cut(s)	235, 288
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	293, 484, 744
AsuII	TTCGAA	2 cut(s)	200, 239
BaeGI	GKGCMC	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	145
BauI	CACGAG	2 cut(s)	136, 269
BbrPI	CACGTG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	809
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	472, 595, 676
BccI	CCATC	2 cut(s)	78, 448
BceAI	ACGGC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	6 cut(s)	23, 41, 182, 215, 501, 696
BisI	GCNGC	3 cut(s)	486, 609, 665
BlsI	GCNGC	3 cut(s)	487, 610, 666
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	6 cut(s)	337, 620, 758, 773, 808, 891
BmuI	ACTGGG	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	2 cut(s)	200, 239
BpuEI	CTTGAG	2 cut(s)	107, 838
BsaAI	YACGTR	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 220, 922
Bse1I	ACTGG	2 cut(s)	157, 334
Bse3DI	GCAATG	1 cut(s)	744
BseGI	GGATG	2 cut(s)	611, 906
BseLI	CCNNNNNNNGG	3 cut(s)	164, 220, 922
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	4 cut(s)	94, 118, 515, 561
BseNI	ACTGG	2 cut(s)	157, 334
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	3 cut(s)	472, 595, 676
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	851
Bsh1236I	CGCG	1 cut(s)	931
BshFI	GGCC	3 cut(s)	156, 383, 915
BsiHKAI	GWGCWC	1 cut(s)	809
BslI	CCNNNNNNNGG	3 cut(s)	164, 220, 922
BsmAI	GTCTC	1 cut(s)	566
BsmI	GAATGC	2 cut(s)	185, 877
BsnI	GGCC	3 cut(s)	156, 383, 915
Bso31I	GGTCTC	1 cut(s)	566
Bsp119I	TTCGAA	2 cut(s)	200, 239
Bsp1286I	GDGCHC	2 cut(s)	145, 809
Bsp143I	GATC	2 cut(s)	495, 876
Bsp68I	TCGCGA	1 cut(s)	931
BspANI	GGCC	3 cut(s)	156, 383, 915
BspCNI	CTCAG	4 cut(s)	93, 117, 516, 562
BspFNI	CGCG	1 cut(s)	931
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	503
BspT104I	TTCGAA	2 cut(s)	200, 239
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	157, 334
BssMI	GATC	2 cut(s)	495, 876
BssSI	CACGAG	2 cut(s)	136, 269
Bst2BI	CACGAG	2 cut(s)	136, 269
Bst4CI	ACNGT	4 cut(s)	15, 281, 324, 601
BstAPI	GCANNNNNTGC	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	492
BstBI	TTCGAA	2 cut(s)	200, 239
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	4 cut(s)	80, 104, 524, 570
BstF5I	GGATG	2 cut(s)	611, 906
BstFNI	CGCG	1 cut(s)	931
BstKTI	GATC	2 cut(s)	498, 879
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	495, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 617, 774, 783
BstSLI	GKGCMC	1 cut(s)	809
BstUI	CGCG	1 cut(s)	931
BstV1I	GCAGC	3 cut(s)	472, 595, 676
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	156, 383, 915
BtsCI	GGATG	2 cut(s)	611, 906
BtsI	GCAGTG	3 cut(s)	513, 839, 851
BtsIMutI	CAGTG	7 cut(s)	150, 159, 513, 597, 689, 839, 851
BtuMI	TCGCGA	1 cut(s)	931
Cac8I	GCNNGC	1 cut(s)	775
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	130, 277, 622, 658
CviAII	CATG	5 cut(s)	97, 434, 478, 778, 880
CviQI	GTAC	4 cut(s)	130, 277, 622, 658
DdeI	CTNAG	4 cut(s)	80, 104, 524, 570
DpnI	GATC	2 cut(s)	497, 878
DpnII	GATC	2 cut(s)	495, 876
EaeI	YGGCCR	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	566
Eco72I	CACGTG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	5
EcoT22I	ATGCAT	2 cut(s)	647, 788
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	5 cut(s)	100, 437, 481, 781, 883
FatI	CATG	5 cut(s)	96, 433, 477, 777, 879
Fnu4HI	GCNGC	3 cut(s)	486, 609, 665
FokI	GGATG	2 cut(s)	598, 913
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	486, 609, 665
FspBI	CTAG	6 cut(s)	23, 41, 182, 215, 501, 696
GluI	GCNGC	3 cut(s)	486, 609, 665
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	156, 383, 915
Hin1II	CATG	5 cut(s)	100, 437, 481, 781, 883
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	118, 168, 691, 926
HpaI	GTTAAC	1 cut(s)	550
HphI	GGTGA	3 cut(s)	293, 484, 744
Hpy166II	GTNNAC	4 cut(s)	327, 475, 550, 807
Hpy188I	TCNGA	4 cut(s)	83, 107, 173, 571
Hpy188III	TCNNGA	2 cut(s)	434, 930
Hpy8I	GTNNAC	4 cut(s)	327, 475, 550, 807
HpyAV	CCTTC	9 cut(s)	76, 196, 246, 353, 463, 529, 591, 748, 916
HpyCH4III	ACNGT	4 cut(s)	15, 281, 324, 601
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	9 cut(s)	60, 422, 611, 645, 749, 786, 807, 832, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 617, 774, 783
HpyF3I	CTNAG	4 cut(s)	80, 104, 524, 570
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	5 cut(s)	100, 437, 481, 781, 883
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	495, 876
LmnI	GCTCC	2 cut(s)	448, 539
LpnPI	CCDG	9 cut(s)	76, 138, 315, 320, 387, 528, 701, 768, 870
Lsp1109I	GCAGC	3 cut(s)	472, 595, 676
LweI	GCATC	6 cut(s)	337, 620, 758, 773, 808, 891
MaeI	CTAG	6 cut(s)	23, 41, 182, 215, 501, 696
MaeII	ACGT	1 cut(s)	491
MalI	GATC	2 cut(s)	497, 878
MboI	GATC	2 cut(s)	495, 876
MboII	GAAGA	3 cut(s)	541, 544, 733
MfeI	CAATTG	2 cut(s)	543, 917
MhlI	GDGCHC	2 cut(s)	145, 809
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	7 cut(s)	5, 288, 339, 543, 672, 917, 942
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	2 cut(s)	34, 282
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	2 cut(s)	647, 788
MroXI	GAANNNNTTC	2 cut(s)	235, 288
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	2 cut(s)	210, 549
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	383
MunI	CAATTG	2 cut(s)	543, 917
Mva1269I	GAATGC	2 cut(s)	185, 877
MvnI	CGCG	1 cut(s)	931
MwoI	GCNNNNNNNGC	4 cut(s)	407, 617, 774, 783
NdeII	GATC	2 cut(s)	495, 876
NlaIII	CATG	5 cut(s)	100, 437, 481, 781, 883
NlaIV	GGNNCC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	931
NsiI	ATGCAT	2 cut(s)	647, 788
NspV	TTCGAA	2 cut(s)	200, 239
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	185, 877
PdmI	GAANNNNTTC	2 cut(s)	235, 288
PfeI	GAWTC	3 cut(s)	118, 168, 691
PkrI	GCNGC	3 cut(s)	487, 610, 666
PleI	GAGTC	1 cut(s)	934
PmaCI	CACGTG	1 cut(s)	492
PmlI	CACGTG	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	934
Ppu21I	YACGTR	1 cut(s)	492
PspCI	CACGTG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	931
RsaI	GTAC	4 cut(s)	131, 278, 623, 659
RsaNI	GTAC	4 cut(s)	130, 277, 622, 658
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	210, 549
SatI	GCNGC	3 cut(s)	486, 609, 665
Sau3AI	GATC	2 cut(s)	495, 876
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	935
SduI	GDGCHC	2 cut(s)	145, 809
SetI	ASST	9 cut(s)	216, 246, 257, 428, 441, 453, 474, 494, 520
SfaNI	GCATC	6 cut(s)	337, 620, 758, 773, 808, 891
SfuI	TTCGAA	2 cut(s)	200, 239
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	122, 817
SmoI	CTYRAG	2 cut(s)	122, 817
Sse9I	AATT	7 cut(s)	5, 288, 339, 543, 672, 917, 942
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	6 cut(s)	23, 41, 182, 215, 501, 696
TaaI	ACNGT	4 cut(s)	15, 281, 324, 601
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	200, 229, 239
TasI	AATT	7 cut(s)	5, 288, 339, 543, 672, 917, 942
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	3 cut(s)	118, 168, 691
Tru1I	TTAA	2 cut(s)	210, 549
Tru9I	TTAA	2 cut(s)	210, 549
TscAI	CASTG	7 cut(s)	157, 166, 513, 604, 689, 839, 858
TseI	GCWGC	3 cut(s)	485, 608, 664
TspDTI	ATGAA	6 cut(s)	37, 58, 422, 733, 740, 829
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	7 cut(s)	157, 166, 513, 604, 689, 839, 858
VneI	GTGCAC	1 cut(s)	805
XapI	RAATTY	2 cut(s)	5, 288
XmnI	GAANNNNTTC	2 cut(s)	235, 288
XspI	CTAG	6 cut(s)	23, 41, 182, 215, 501, 696
Zsp2I	ATGCAT	2 cut(s)	647, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.