Rorug04G0254500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
42743174 .. 42743395
222 bp
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UTR
Exon/CDS
Intron
Rorug04G0254500.1

Sequence Viewer

Length: 222 bp
ATGGCACAAGCTATACCTATGTACGTGATTAACTGTTACCTTCTTCCTCAGACTTTATGTTATGATCTGCAGCAATTGTGTGCCCAATTTTGGTGGGGTGATACCGATGCCAAAAAGAAAATACATTGGCAATCATTGGAATGTCTCTGTGTTCCAAAGAATAAGGGTGAAATGGGCTCTATGCCCCCCTTGTATTCTGCAGTTTCATTAATCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.33

Weight (kDa)

7.6

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 70
AseI ATTAAT 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 110, 179
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 2 cut(s) 68, 198
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmsI GCATC 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 85, 179
Bsp143I GATC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 61
BspMAI CTGCAG 2 cut(s) 72, 202
BssMI GATC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 68, 198
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 22
CspCI CAANNNNNGTGG 2 cut(s) 74, 109
CviJI RGCY 3 cut(s) 11, 177, 218
CviKI_1 RGCY 3 cut(s) 11, 177, 218
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 179
FaiI YATR 5 cut(s) 14, 20, 58, 63, 182
Fnu4HI GCNGC 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HphI GGTGA 2 cut(s) 110, 179
Hpy188I TCNGA 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 70, 200
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 24
Kzo9I GATC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 35
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 85, 179
MluCI AATT 2 cut(s) 74, 86
MnlI CCTC 1 cut(s) 57
MseI TTAA 3 cut(s) 30, 209, 220
MslI CAYNNNNRTG 1 cut(s) 139
MunI CAATTG 1 cut(s) 74
NdeII GATC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 72
Ppu21I YACGTR 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 209
PstI CTGCAG 2 cut(s) 72, 202
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 3 cut(s) 30, 209, 220
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 64
SduI GDGCHC 2 cut(s) 85, 179
SetI ASST 4 cut(s) 13, 19, 27, 42
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 68, 198
SgeI CNNG 3 cut(s) 20, 37, 202
SmiMI CAYNNNNRTG 1 cut(s) 139
Sse9I AATT 2 cut(s) 74, 86
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 27
TasI AATT 2 cut(s) 74, 86
Tru1I TTAA 3 cut(s) 30, 209, 220
Tru9I TTAA 3 cut(s) 30, 209, 220
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 195
VspI ATTAAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.