FvH4_4g25043

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001251
Physical Location & Seq
Forward (+)
26978247 .. 26979410
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25043.t1

Sequence Viewer

Length: 849 bp
ATGGAATTACAAGAGTTTTTCATGGTGGTAGCAATCACCATAGGGTTGGTATCTGTGTGTATGTCTTTGATCAATTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCTCCAAAGAAACTCAAGGAGTACGGATCATGGGCTATCATCACTGGCTCAGCTCAAGGAATAGGGAAAGCTCTTGCATTTGAAATGGCTTCAGAGGGTCTCAACATTATCTTGGTTGATAAAAACCATTCTGCCCTCGAAGCTACCTCCAATGAATTAAGAAACAAAAATGGGATGAGTTACCCTTATCCAAAGTTTTTCCATGAGGTTGATCTGGAGCTCATGGACGACATCATGAAGGTGAACATGGAAGCAGCAAGTTGGATGACTAAGGCTGTGCTTCCGGGTATGCTGAAGAAGAAGAAAGGAGCAATTGTCAACATTGGCTCTTCTTCCACTGAGATAGCCTCTTCTTTTCCTCTGTACACTCTTTATGCTACAACCAAAGCGTACCTTAAAACGTTCTCAAGAAGCATTAGTTTGGAATACAAGCAGCATGGAATAGACATTCAGTGTCAGGTTCCTTTGTTCGTCGCGACGAGGCTTACGAAGATAAAGAAATCTTCCTTGTTCATCCCGTCACCAGAAACGTTTAGCAAATCAAGCATTCGATGGATTGGTCATGACAACCTTTGTACGCCCTACTGGAGCCACTCTGTGTTGGGGTTCTTTGGCCGTGCATTACCCCATGCTCTCCTAAACGCCACCATTTTTGGGTATTTCCTTCGTAACAGAAAGAGAGGCCAACTGAATGAGTTGCGGAAAGGAAGTACTCTGCACCAACAGAGCAGTCCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

283

Amino Acids

31.8

Weight (kDa)

9.65

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 94 7.8e-09 short chain dehydrogenase
adh_short PF00106 100 - 201 1.8e-20 short chain dehydrogenase
adh_short_C2 PF13561 100 - 200 3.3e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 584
AciI CCGC 1 cut(s) 808
AclI AACGTT 2 cut(s) 509, 638
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 721
AcuI CTGAAG 2 cut(s) 183, 422
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 5 cut(s) 131, 473, 500, 685, 820
AfiI CCNNNNNNNGG 1 cut(s) 762
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 4 cut(s) 161, 179, 251, 328
AluI AGCT 4 cut(s) 161, 179, 251, 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 100, 212
AlwI GGATC 1 cut(s) 142
AoxI GGCC 2 cut(s) 721, 790
ApeKI GCWGC 2 cut(s) 362, 541
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 3 cut(s) 28, 361, 621
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 374, 553
BccI CCATC 2 cut(s) 78, 654
BceAI ACGGC 1 cut(s) 708
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 100, 212
BisI GCNGC 2 cut(s) 363, 542
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 2 cut(s) 364, 543
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 570, 698
BmrFI CCNGG 1 cut(s) 393
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 2 cut(s) 344, 715
Bpu1102I GCTNAGC 1 cut(s) 157
BpuEI CTTGAG 3 cut(s) 107, 147, 499
BpuMI CCSGG 1 cut(s) 393
BsaI GGTCTC 2 cut(s) 100, 212
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 762
Bse1I ACTGG 2 cut(s) 157, 698
BseGI GGATG 3 cut(s) 288, 378, 621
BseLI CCNNNNNNNGG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 95, 171, 438
BseNI ACTGG 2 cut(s) 157, 698
BseXI GCAGC 2 cut(s) 374, 553
BsgI GTGCAG 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 2 cut(s) 723, 792
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 762
BsmAI GTCTC 2 cut(s) 100, 212
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 2 cut(s) 723, 792
Bso31I GGTCTC 2 cut(s) 100, 212
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 3 cut(s) 69, 134, 319
Bsp1720I GCTNAGC 1 cut(s) 157
Bsp68I TCGCGA 1 cut(s) 584
BspACI CCGC 1 cut(s) 808
BspANI GGCC 2 cut(s) 723, 792
BspCNI CTCAG 3 cut(s) 96, 170, 439
BspFNI CGCG 1 cut(s) 584
BspHI TCATGA 2 cut(s) 342, 670
BspLI GGNNCC 2 cut(s) 570, 698
BspPI GGATC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 442
BspTNI GGTCTC 2 cut(s) 100, 212
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 2 cut(s) 157, 698
BssMI GATC 3 cut(s) 69, 134, 319
Bst6I CTCTTC 2 cut(s) 442, 463
BstAUI TGTACA 1 cut(s) 471
BstDEI CTNAG 4 cut(s) 104, 157, 378, 447
BstF5I GGATG 3 cut(s) 288, 378, 621
BstFNI CGCG 1 cut(s) 584
BstKTI GATC 3 cut(s) 72, 137, 322
BstMAI GTCTC 2 cut(s) 100, 212
BstMBI GATC 3 cut(s) 69, 134, 319
BstMWI GCNNNNNNNGC 2 cut(s) 248, 651
BstSCI CCNGG 1 cut(s) 391
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 374, 553
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 2 cut(s) 723, 792
BtsCI GGATG 3 cut(s) 288, 378, 621
BtsIMutI CAGTG 3 cut(s) 150, 444, 566
BtuMI TCGCGA 1 cut(s) 584
CciI TCATGA 2 cut(s) 342, 670
Csp6I GTAC 5 cut(s) 130, 472, 499, 684, 819
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviQI GTAC 5 cut(s) 130, 472, 499, 684, 819
DdeI CTNAG 4 cut(s) 104, 157, 378, 447
DpnI GATC 3 cut(s) 71, 136, 321
DpnII GATC 3 cut(s) 69, 134, 319
DraIII CACNNNGTG 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 442, 463
EarI CTCTTC 2 cut(s) 442, 463
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 2 cut(s) 100, 212
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 183, 422
EcoICRI GAGCTC 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 330
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 825
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 363, 542
FokI GGATG 3 cut(s) 295, 385, 608
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 363, 542
GluI GCNGC 2 cut(s) 363, 542
GsuI CTGGAG 2 cut(s) 344, 715
HaeIII GGCC 2 cut(s) 723, 792
HapII CCGG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HpaII CCGG 1 cut(s) 392
HphI GGTGA 3 cut(s) 28, 361, 621
Hpy166II GTNNAC 3 cut(s) 352, 427, 474
Hpy188I TCNGA 2 cut(s) 105, 202
Hpy188III TCNNGA 5 cut(s) 323, 343, 516, 583, 671
Hpy8I GTNNAC 3 cut(s) 352, 427, 474
Hpy99I CGWCG 2 cut(s) 584, 589
HpyAV CCTTC 2 cut(s) 340, 782
HpyCH4IV ACGT 2 cut(s) 509, 638
HpyCH4V TGCA 3 cut(s) 185, 728, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 651
HpyF3I CTNAG 4 cut(s) 104, 157, 378, 447
HpySE526I ACGT 2 cut(s) 509, 638
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 134, 319
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 3 cut(s) 325, 416, 696
LpnPI CCDG 6 cut(s) 138, 308, 405, 551, 645, 679
Lsp1109I GCAGC 2 cut(s) 374, 553
MaeII ACGT 2 cut(s) 509, 638
MaeIII GTNAC 3 cut(s) 287, 627, 776
MalI GATC 3 cut(s) 71, 136, 321
MboI GATC 3 cut(s) 69, 134, 319
MboII GAAGA 8 cut(s) 415, 418, 421, 429, 432, 450, 603, 610
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 5, 73, 263, 420
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 9 cut(s) 120, 196, 254, 265, 307, 466, 477, 582, 782
MseI TTAA 2 cut(s) 266, 504
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 654
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 2 cut(s) 248, 651
NciI CCSGG 1 cut(s) 393
NdeII GATC 3 cut(s) 69, 134, 319
NlaIV GGNNCC 2 cut(s) 570, 698
NmuCI GTSAC 1 cut(s) 627
NruI TCGCGA 1 cut(s) 584
PagI TCATGA 2 cut(s) 342, 670
PciSI GCTCTTC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 593
PctI GAATGC 1 cut(s) 654
PkrI GCNGC 2 cut(s) 364, 543
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 2 cut(s) 509, 638
PspN4I GGNNCC 2 cut(s) 570, 698
RruI TCGCGA 1 cut(s) 584
RsaI GTAC 5 cut(s) 131, 473, 500, 685, 820
RsaNI GTAC 5 cut(s) 130, 472, 499, 684, 819
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 266, 504
SatI GCNGC 2 cut(s) 363, 542
Sau3AI GATC 3 cut(s) 69, 134, 319
ScaI AGTACT 1 cut(s) 820
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 3 cut(s) 122, 162, 514
SmoI CTYRAG 3 cut(s) 122, 162, 514
Sse9I AATT 4 cut(s) 5, 73, 263, 420
SsiI CCGC 1 cut(s) 808
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 391
TaiI ACGT 2 cut(s) 512, 641
TaqI TCGA 2 cut(s) 246, 658
TasI AATT 4 cut(s) 5, 73, 263, 420
TatI WGTACW 2 cut(s) 471, 818
Tru1I TTAA 2 cut(s) 266, 504
Tru9I TTAA 2 cut(s) 266, 504
TscAI CASTG 3 cut(s) 157, 451, 566
TseFI GTSAC 1 cut(s) 627
TseI GCWGC 2 cut(s) 362, 541
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 4 cut(s) 10, 276, 359, 610
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 3 cut(s) 157, 451, 566
ZrmI AGTACT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.