Prupe.1G239200_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001251
Physical Location & Seq
Forward (+)
25367412 .. 25368819
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G239200.1

Sequence Viewer

Length: 921 bp
ATGGAATTCCAAGAAATTTTCATAGTGGCAACAAGCACTGTAGGCTTCATCTCTCTTTGTAAACCCATCATCAGTTTTCTCAGATGGGTATGGGTCGTGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCATGGGCTCTCATCACTGGCTCCACTGATGGAATTGGAAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTTAACCTTGTCTTGGTTGGTCGAAACCCTTCAAAGCTTGAAGCTACCTCCACTGAATTACATGAAAAATATGGTGGACAAATTCAGAATAAGAACATTGTCATTGACTTGGCCAAGTTCAGTGGGGAGGAGATAGGAAATGCCATAGAGGAAGGAATAAAAGGCCTTGATGTTGGCATTTTGATTAATAATGCAGGGGTTGATTTGGAGCTGATGGAGAGCACCATGAAGGTGAACATAGAGGGGGCCACTTGGGTGACTAAGGCAGTGCTTCCAATTATGCTTAAGAAGAAGAAAGGAGCAATTGTCAACATTGGCTCTGCTTCCTCTGAGATTCTCCCTTCTTACCCTCTTTACACTGTTTATGCTGCCTCCAAAGCGTACATTTCAATGTTCTCAAAATCCATTAGTTTGGAATACAAGAAGCATGGAATTGACGTTCAGTGTCAGATTCCTATGTTGGTGGCAACAAAGATGACAAAGTTAAAGCCATCTTCATTCTTCGTTGCATCACCAGAGATGTACAGCAAAGCAAGCATGAGATGGATTGGCTATGAGCATCTCTGCACACCCTATTGGGGTCACTCTGTGCAGTGGCTCATAATACATGTTTTGCCTGATGTGTTATTGAATGCCATCATCCTTAGGTACTTCATTGGGATGCGAAGGAGAGGCCAATTGAAGGAGGCACAGAACAAAAGTAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

307

Amino Acids

34.09

Weight (kDa)

9.35

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 3 cut(s) 5, 15, 288
AdeI CACNNNGTG 1 cut(s) 796
AfaI GTAC 3 cut(s) 590, 731, 857
AfiI CCNNNNNNNGG 3 cut(s) 220, 785, 889
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 7 cut(s) 191, 201, 240, 248, 597, 838, 889
AleI CACNNNNGTG 1 cut(s) 461
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 3 cut(s) 244, 251, 418
AluI AGCT 3 cut(s) 244, 251, 418
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 100
AoxI GGCC 4 cut(s) 318, 370, 453, 880
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 3 cut(s) 5, 15, 288
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 451, 475, 711
AxyI CCTNAGG 1 cut(s) 851
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 562
BccI CCATC 7 cut(s) 74, 78, 158, 415, 706, 744, 851
BcoDI GTCTC 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 2 cut(s) 157, 454
BmsI GCATC 3 cut(s) 725, 775, 858
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 785, 889
Bse1I ACTGG 1 cut(s) 157
Bse21I CCTNAGG 1 cut(s) 851
BseGI GGATG 2 cut(s) 846, 873
BseLI CCNNNNNNNGG 3 cut(s) 220, 785, 889
BseMII CTCAG 3 cut(s) 94, 95, 528
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 562
BsgI GTGCAG 2 cut(s) 757, 818
BshFI GGCC 4 cut(s) 320, 372, 455, 882
BsiHKAI GWGCWC 1 cut(s) 431
BslI CCNNNNNNNGG 3 cut(s) 220, 785, 889
BsmAI GTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 4 cut(s) 320, 372, 455, 882
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 145, 431
Bsp1407I TGTACA 1 cut(s) 729
BspANI GGCC 4 cut(s) 320, 372, 455, 882
BspCNI CTCAG 3 cut(s) 93, 96, 529
BspLI GGNNCC 2 cut(s) 157, 454
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 40, 568
BstAFI CTTAAG 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 742
BstDEI CTNAG 5 cut(s) 80, 104, 468, 537, 851
BstF5I GGATG 2 cut(s) 846, 873
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 42, 584, 741
BstNSI RCATGY 1 cut(s) 818
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 851
BsuRI GGCC 4 cut(s) 320, 372, 455, 882
BtsCI GGATG 2 cut(s) 846, 873
BtsI GCAGTG 2 cut(s) 480, 806
BtsIMutI CAGTG 9 cut(s) 36, 150, 159, 258, 334, 480, 564, 656, 806
Cac8I GCNNGC 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 3 cut(s) 589, 730, 856
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 6 cut(s) 138, 269, 433, 635, 745, 815
CviQI GTAC 3 cut(s) 589, 730, 856
DdeI CTNAG 5 cut(s) 80, 104, 468, 537, 851
DraIII CACNNNGTG 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 6 cut(s) 141, 272, 436, 638, 748, 818
FatI CATG 6 cut(s) 137, 268, 432, 634, 744, 814
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 2 cut(s) 833, 880
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 576
HaeIII GGCC 4 cut(s) 320, 372, 455, 882
Hin1II CATG 6 cut(s) 141, 272, 436, 638, 748, 818
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 118, 541, 658
HphI GGTGA 3 cut(s) 451, 475, 711
Hpy166II GTNNAC 5 cut(s) 62, 284, 442, 517, 911
Hpy188I TCNGA 5 cut(s) 83, 105, 294, 538, 657
Hpy8I GTNNAC 5 cut(s) 62, 284, 442, 517, 911
HpyAV CCTTC 6 cut(s) 246, 353, 430, 558, 867, 883
HpyCH4III ACNGT 2 cut(s) 40, 568
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 4 cut(s) 401, 716, 774, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 584, 741
HpyF3I CTNAG 5 cut(s) 80, 104, 468, 537, 851
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 6 cut(s) 141, 272, 436, 638, 748, 818
LmnI GCTCC 3 cut(s) 161, 415, 506
LpnPI CCDG 4 cut(s) 138, 387, 735, 837
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 3 cut(s) 725, 775, 858
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 463, 788
MboII GAAGA 4 cut(s) 508, 511, 693, 700
MfeI CAATTG 2 cut(s) 510, 884
MhlI GDGCHC 2 cut(s) 145, 431
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 9 cut(s) 5, 15, 168, 263, 288, 483, 510, 639, 884
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 9 cut(s) 265, 328, 349, 442, 544, 567, 589, 872, 886
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 320
MseI TTAA 4 cut(s) 210, 393, 492, 692
MslI CAYNNNNRTG 4 cut(s) 437, 461, 596, 866
Msp20I TGGCCA 1 cut(s) 320
MspCI CTTAAG 1 cut(s) 491
MunI CAATTG 2 cut(s) 510, 884
Mva1269I GAATGC 1 cut(s) 844
MwoI GCNNNNNNNGC 3 cut(s) 42, 584, 741
NlaIII CATG 6 cut(s) 141, 272, 436, 638, 748, 818
NlaIV GGNNCC 2 cut(s) 157, 454
NmuCI GTSAC 2 cut(s) 463, 788
NspI RCATGY 1 cut(s) 818
OliI CACNNNNGTG 1 cut(s) 461
PceI AGGCCT 1 cut(s) 372
PciI ACATGT 1 cut(s) 814
PctI GAATGC 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 118, 541, 658
PkrI GCNGC 1 cut(s) 577
PscI ACATGT 1 cut(s) 814
PshBI ATTAAT 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 157, 454
PspPI GGNCC 1 cut(s) 453
RsaI GTAC 3 cut(s) 590, 731, 857
RsaNI GTAC 3 cut(s) 589, 730, 856
RseI CAYNNNNRTG 4 cut(s) 437, 461, 596, 866
SaqAI TTAA 4 cut(s) 210, 393, 492, 692
SatI GCNGC 1 cut(s) 576
Sau96I GGNCC 1 cut(s) 453
SduI GDGCHC 2 cut(s) 145, 431
SetI ASST 8 cut(s) 216, 246, 253, 257, 420, 441, 648, 857
SfaNI GCATC 3 cut(s) 725, 775, 858
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 4 cut(s) 437, 461, 596, 866
SmlI CTYRAG 2 cut(s) 122, 491
SmoI CTYRAG 2 cut(s) 122, 491
Sse9I AATT 9 cut(s) 5, 15, 168, 263, 288, 483, 510, 639, 884
SseBI AGGCCT 1 cut(s) 372
StuI AGGCCT 1 cut(s) 372
TaaI ACNGT 2 cut(s) 40, 568
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 229
TasI AATT 9 cut(s) 5, 15, 168, 263, 288, 483, 510, 639, 884
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 3 cut(s) 118, 541, 658
Tru1I TTAA 4 cut(s) 210, 393, 492, 692
Tru9I TTAA 4 cut(s) 210, 393, 492, 692
TscAI CASTG 9 cut(s) 43, 157, 166, 265, 334, 480, 571, 656, 806
TseFI GTSAC 2 cut(s) 463, 788
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 463, 788
TspDTI ATGAA 6 cut(s) 10, 37, 285, 449, 693, 850
TspRI CASTG 9 cut(s) 43, 157, 166, 265, 334, 480, 571, 656, 806
Vha464I CTTAAG 1 cut(s) 491
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 3 cut(s) 5, 15, 288
XceI RCATGY 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.