Rh4BG319500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
48625996 .. 48626802
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG319500.1

Sequence Viewer

Length: 624 bp
ATGGAGCTACAAGAGTTTTTCATTGTGGCAGCAATCACCATAGGTTTCCTATCTGTTTGTAAATCTTTGATCAATTTTGTGAGATGGGTATGGGTCATGTTTTTAAGACCTCCAAGGAATCTCAAGGAGTATGGATCTTGGGCAATTATCACTGGCTCCACTGATGGAATAGGCAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTTAACCTTGTCTTGGTCGGTCGAAGCCCTTCGAAGCTCCAAGCTACCTCTAATGGAATCCGCGGGAAATACTTTCATGAACGAGTGAAAGTTAAGAGCATTGTCATCGACTTGGCAAAATTGAGTGGCGAGGAGATAGCTAAAACCATAGAGGAAGGCATCAAAGGGCTTGATGTTGGCATTTTGATTAACAATGCAGGGATGACTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTTGGAGCTGATGGAGAGCATTACAAAGGTGAACATGGAAGCCCCAAGTTGGGTGACTAGGGCAGTGCTTCCCGGTATGCTCAAGAAGAAGAAAGGAGCAATTATCAATATCGGCTCTGATTTATCCGAGGACCCTTCTTTGCCTCTATACACTCTTTATGCTGCTTCTAAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

22.86

Weight (kDa)

9.23

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 206 1.2e-29 short chain dehydrogenase
adh_short_C2 PF13561 54 - 206 7.8e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 268, 270
AclWI GGATC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 220, 495, 496
AgsI TTSAA 2 cut(s) 191, 201
AluBI AGCT 5 cut(s) 7, 244, 251, 347, 454
AluI AGCT 5 cut(s) 7, 244, 251, 347, 454
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 29, 608
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 28, 487, 511
AsuII TTCGAA 1 cut(s) 239
AvaII GGWCC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 41, 595
BccI CCATC 3 cut(s) 78, 158, 451
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 519
BfaI CTAG 1 cut(s) 504
BisI GCNGC 2 cut(s) 30, 609
BlsI GCNGC 2 cut(s) 31, 610
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 157, 579
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 107, 512
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 113, 268, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 495, 496
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 113, 268, 573
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 220, 495, 496
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 2 cut(s) 41, 595
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 3 cut(s) 220, 495, 496
Bsp119I TTCGAA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 69, 134
BspACI CCGC 2 cut(s) 268, 270
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 2 cut(s) 283, 436
BspLI GGNNCC 2 cut(s) 157, 579
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 113, 268, 573
BssMI GATC 2 cut(s) 69, 134
BssT1I CCWWGG 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 72, 137
BstMBI GATC 2 cut(s) 69, 134
BstMCI CGRYCG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 517
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 41, 595
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 150, 159, 516
CciI TCATGA 2 cut(s) 283, 436
Cfr13I GGNCC 1 cut(s) 577
Cfr42I CCGCGG 1 cut(s) 271
CviAII CATG 4 cut(s) 97, 284, 437, 481
DpnI GATC 2 cut(s) 71, 136
DpnII GATC 2 cut(s) 69, 134
Eco130I CCWWGG 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 4 cut(s) 100, 287, 440, 484
FatI CATG 4 cut(s) 96, 283, 436, 480
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 30, 609
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 2 cut(s) 30, 609
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 30, 609
HapII CCGG 1 cut(s) 519
Hin1II CATG 4 cut(s) 100, 287, 440, 484
HinfI GANTC 2 cut(s) 118, 264
HpaII CCGG 1 cut(s) 519
HphI GGTGA 3 cut(s) 28, 487, 511
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 565, 574
Hpy188III TCNNGA 4 cut(s) 284, 437, 529, 621
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 246, 356, 591
HpyCH4V TGCA 2 cut(s) 404, 425
Hsp92II CATG 4 cut(s) 100, 287, 440, 484
Ksp22I TGATCA 1 cut(s) 69
KspI CCGCGG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 69, 134
LmnI GCTCC 5 cut(s) 4, 161, 249, 451, 542
LpnPI CCDG 3 cut(s) 138, 390, 532
Lsp1109I GCAGC 2 cut(s) 41, 595
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 499
MalI GATC 2 cut(s) 71, 136
MboI GATC 2 cut(s) 69, 134
MboII GAAGA 2 cut(s) 544, 547
MflI RGATCY 1 cut(s) 134
MluCI AATT 4 cut(s) 73, 144, 326, 546
MnlI CCTC 7 cut(s) 120, 265, 331, 352, 433, 568, 600
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 4 cut(s) 104, 210, 300, 396
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 270
NciI CCSGG 1 cut(s) 519
NdeII GATC 2 cut(s) 69, 134
NlaIII CATG 4 cut(s) 100, 287, 440, 484
NlaIV GGNNCC 2 cut(s) 157, 579
NmuCI GTSAC 1 cut(s) 499
NspV TTCGAA 1 cut(s) 239
PagI TCATGA 2 cut(s) 283, 436
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 118, 264
PkrI GCNGC 2 cut(s) 31, 610
PpuMI RGGWCCY 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 157, 579
PspPI GGNCC 1 cut(s) 577
PspPPI RGGWCCY 1 cut(s) 577
PsuI RGATCY 1 cut(s) 134
SacII CCGCGG 1 cut(s) 271
SaqAI TTAA 4 cut(s) 104, 210, 300, 396
SatI GCNGC 2 cut(s) 30, 609
Sau3AI GATC 2 cut(s) 69, 134
Sau96I GGNCC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 519
SfaNI GCATC 1 cut(s) 375
Sfr303I CCGCGG 1 cut(s) 271
SfuI TTCGAA 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 122, 527
SmoI CTYRAG 2 cut(s) 122, 527
Sse9I AATT 4 cut(s) 73, 144, 326, 546
SsiI CCGC 2 cut(s) 268, 270
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 113
TaqI TCGA 3 cut(s) 229, 239, 315
TaqII GACCGA 1 cut(s) 215
TasI AATT 4 cut(s) 73, 144, 326, 546
TfiI GAWTC 2 cut(s) 118, 264
Tru1I TTAA 4 cut(s) 104, 210, 300, 396
Tru9I TTAA 4 cut(s) 104, 210, 300, 396
TscAI CASTG 3 cut(s) 157, 166, 516
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 2 cut(s) 29, 608
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 4 cut(s) 10, 272, 300, 425
TspRI CASTG 3 cut(s) 157, 166, 516
VpaK11BI GGWCC 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.