RLG00000006863

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
11199140 .. 11200924
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006863

Sequence Viewer

Length: 435 bp
ATGGAGCCACAAGAGTTTTTCATTGTGACAGCAATCACCATAGGTTTCCTATCTGTTTGTAAATCTTTGATCAATTTTGTGAGATGGGTATGGGTCATGTTTTTAAGACCTCCAAGGAATCTCAAGGAGTATGGATCTTGGGCAATCATCATTGGCTCCACTGATGGAATAGGGATGACTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTTGGGGCTGATGGAGAGCATTATAAAGGTGAACATGGAAGCCCCAAGTTGGGTGACTAGGGCAGTGCTTCCCGGTACCTTAAAATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCATGGAATTGACATTCAATGTCAGGTTAATTTTCCTTCTTTCTTCGCAGCGTATTTTGTTATTGTTCTTTGTTTTCATTGTTGATACTACTGTTCATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.56

Weight (kDa)

6.09

Isoelectric Point (pI)

25.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AclWI GGATC 1 cut(s) 142
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 261, 262
AgsI TTSAA 1 cut(s) 349
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 330, 379
Asp718I GGTACC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 28, 253, 277
BaeI ACNNNNGTAYC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 342, 391
BccI CCATC 3 cut(s) 78, 158, 217
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 331, 380
BlsI GCNGC 2 cut(s) 332, 381
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 3 cut(s) 6, 157, 289
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 298
BpuEI CTTGAG 2 cut(s) 107, 288
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 262
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 261, 262
BseXI GCAGC 2 cut(s) 342, 391
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 261, 262
Bsp143I GATC 2 cut(s) 69, 134
BspHI TCATGA 2 cut(s) 202, 427
BspLI GGNNCC 3 cut(s) 6, 157, 289
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 69, 134
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 424
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 2 cut(s) 72, 137
BstMBI GATC 2 cut(s) 69, 134
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 342, 391
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 159, 282
CciI TCATGA 2 cut(s) 202, 427
Csp6I GTAC 1 cut(s) 288
CviAII CATG 5 cut(s) 97, 203, 247, 334, 428
CviJI RGCY 4 cut(s) 7, 156, 220, 254
CviKI_1 RGCY 4 cut(s) 7, 156, 220, 254
CviQI GTAC 1 cut(s) 288
DpnI GATC 2 cut(s) 71, 136
DpnII GATC 2 cut(s) 69, 134
Eco130I CCWWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 5 cut(s) 100, 206, 250, 337, 431
FatI CATG 5 cut(s) 96, 202, 246, 333, 427
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 331, 380
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 331, 380
FspBI CTAG 1 cut(s) 270
GluI GCNGC 2 cut(s) 331, 380
HapII CCGG 1 cut(s) 285
Hin1II CATG 5 cut(s) 100, 206, 250, 337, 431
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 28, 253, 277
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 203, 305, 428
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 191, 311
Hsp92II CATG 5 cut(s) 100, 206, 250, 337, 431
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 134
LmnI GCTCC 2 cut(s) 4, 161
LpnPI CCDG 2 cut(s) 298, 340
Lsp1109I GCAGC 2 cut(s) 342, 391
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 25, 265
MalI GATC 2 cut(s) 71, 136
MboI GATC 2 cut(s) 69, 134
MboII GAAGA 1 cut(s) 366
MflI RGATCY 1 cut(s) 134
MluCI AATT 3 cut(s) 73, 338, 360
MnlI CCTC 2 cut(s) 120, 199
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 3 cut(s) 104, 293, 359
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 285
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 69, 134
NlaIII CATG 5 cut(s) 100, 206, 250, 337, 431
NlaIV GGNNCC 3 cut(s) 6, 157, 289
NmuCI GTSAC 2 cut(s) 25, 265
NsiI ATGCAT 1 cut(s) 313
PagI TCATGA 2 cut(s) 202, 427
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 332, 381
PsiI TTATAA 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 6, 157, 289
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 104, 293, 359
SatI GCNGC 2 cut(s) 331, 380
Sau3AI GATC 2 cut(s) 69, 134
ScrFI CCNGG 1 cut(s) 285
SetI ASST 7 cut(s) 46, 112, 197, 210, 243, 293, 359
SfaNI GCATC 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 122, 303
SmoI CTYRAG 2 cut(s) 122, 303
Sse9I AATT 3 cut(s) 73, 338, 360
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 424
TasI AATT 3 cut(s) 73, 338, 360
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 3 cut(s) 104, 293, 359
Tru9I TTAA 3 cut(s) 104, 293, 359
TscAI CASTG 2 cut(s) 166, 282
TseFI GTSAC 2 cut(s) 25, 265
TseI GCWGC 2 cut(s) 330, 379
Tsp45I GTSAC 2 cut(s) 25, 265
TspDTI ATGAA 4 cut(s) 10, 191, 397, 416
TspRI CASTG 2 cut(s) 166, 282
XspI CTAG 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.