RchiOBHm_Chr4g0432201

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001251
Physical Location & Seq
Forward (+)
56390119 .. 56391757
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40084

Sequence Viewer

Length: 972 bp
ATGGAATTACAAGAATTTTTCATAGTCCTAGCAATCACTATAGGGTTGGTCTCTGTTTGTATATCTTTGATCAATTTTGCGAGATGGATATGGGTCATGTTTCTGAGACCTTCAAAGAAACTCAAGGAGTACGGATCATGGGCTATTATCACTGGCTCCGCTCAAGGAATTGGGAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTCAACATTTTCTTGGTTGATAAAAACCATTCAACCCTTGAAGCTACCTCCAATGAATTAAGTGAAAAACATGGTTGGAGAGTTGAGATCAAGAGCATTGTGATGGACTTGGCCAAATTGAGTGGTGAGGAGATAGCTAAAACCATAGAGGAAGGAACGAAAGGGCTCGATGTTGGCATTTTGGTTAATAATGCAGGGATGTGCTACCCTTATCCAAGGTTTTTTCATGAGGTTGATTCAGAACTCATGGAGAACATTATGAAGGTGAACATGGAAGCAGCAACTTGGATGACTAAGGCTGTGCTTCCGGGAATGCTGAAGAAAAAGAAAGGAGCAATTGTTAACATTGGCTCTGCTTCCACTGAGATAGCCCCTTCTTTTCCTCTGTACACTCTTTATGCCACAACAAAAGCGTACCTAAAACTGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCATGGAATTGACATTCAGTGTCAGGTTCCTGTGTTCGTCGCGACAAGACTTACGAAGATAAAGGAATCTTCCTTGTTCATCCCATCACCAGAAACTTTTAGCAAATCAAGCATTCGGTGGATTGGTTATGACAATGTTTGTACGCCCTACTGGAGCCACTCTGTGATGGGATTTGTAGCCCGTGCATTGCCCCATGCTCTCCTGACCGCCACCATTTTTCGGTATTTCCTTGGTAACAGAAAGAGAGGCCAATTGAATGAGTTGCAGAAGAAAAATATACTGCAACGACAGAGCAATCAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

323

Amino Acids

36.36

Weight (kDa)

9.35

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 242 1.4e-40 short chain dehydrogenase
adh_short_C2 PF13561 52 - 241 2.6e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 1 cut(s) 707
AciI CCGC 2 cut(s) 159, 873
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 545
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 4 cut(s) 131, 596, 623, 808
AfiI CCNNNNNNNGG 1 cut(s) 885
AgsI TTSAA 6 cut(s) 114, 191, 201, 240, 248, 922
AluBI AGCT 2 cut(s) 251, 344
AluI AGCT 2 cut(s) 251, 344
Alw26I GTCTC 3 cut(s) 55, 100, 212
AlwI GGATC 1 cut(s) 142
AoxI GGCC 2 cut(s) 318, 913
ApeKI GCWGC 2 cut(s) 485, 664
ApoI RAATTY 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 344, 484, 744
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 497, 676
BccI CCATC 4 cut(s) 78, 304, 757, 826
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 3 cut(s) 55, 100, 212
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 39, 968
BisI GCNGC 2 cut(s) 486, 665
BlsI GCNGC 2 cut(s) 487, 666
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 3 cut(s) 157, 693, 821
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 838
BpuEI CTTGAG 3 cut(s) 107, 147, 622
BpuMI CCSGG 1 cut(s) 516
BsaI GGTCTC 3 cut(s) 55, 100, 212
BsaJI CCNNGG 2 cut(s) 422, 895
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 885
Bse1I ACTGG 2 cut(s) 157, 821
Bse3DI GCAATG 1 cut(s) 851
BseDI CCNNGG 2 cut(s) 422, 895
BseGI GGATG 3 cut(s) 411, 501, 744
BseLI CCNNNNNNNGG 1 cut(s) 885
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 95, 561
BseNI ACTGG 2 cut(s) 157, 821
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 497, 676
Bsh1236I CGCG 1 cut(s) 707
BshFI GGCC 2 cut(s) 320, 915
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 885
BsmAI GTCTC 3 cut(s) 55, 100, 212
BsmI GAATGC 2 cut(s) 525, 777
BsnI GGCC 2 cut(s) 320, 915
Bso31I GGTCTC 3 cut(s) 55, 100, 212
Bsp1286I GDGCHC 1 cut(s) 375
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 3 cut(s) 69, 134, 294
Bsp68I TCGCGA 1 cut(s) 707
BspACI CCGC 2 cut(s) 159, 873
BspANI GGCC 2 cut(s) 320, 915
BspCNI CTCAG 2 cut(s) 96, 562
BspFNI CGCG 1 cut(s) 707
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 157, 693, 821
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 3 cut(s) 55, 100, 212
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 2 cut(s) 157, 821
BssECI CCNNGG 2 cut(s) 422, 895
BssMI GATC 3 cut(s) 69, 134, 294
BssT1I CCWWGG 2 cut(s) 422, 895
Bst4CI ACNGT 1 cut(s) 633
BstAUI TGTACA 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 104, 501, 570
BstF5I GGATG 3 cut(s) 411, 501, 744
BstFNI CGCG 1 cut(s) 707
BstKTI GATC 3 cut(s) 72, 137, 297
BstMAI GTCTC 3 cut(s) 55, 100, 212
BstMBI GATC 3 cut(s) 69, 134, 294
BstMWI GCNNNNNNNGC 1 cut(s) 774
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 39, 968
BstUI CGCG 1 cut(s) 707
BstV1I GCAGC 2 cut(s) 497, 676
BsuRI GGCC 2 cut(s) 320, 915
BtsCI GGATG 3 cut(s) 411, 501, 744
BtsIMutI CAGTG 3 cut(s) 150, 567, 689
BtuMI TCGCGA 1 cut(s) 707
CciI TCATGA 1 cut(s) 433
Csp6I GTAC 4 cut(s) 130, 595, 622, 807
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 8 cut(s) 97, 138, 278, 434, 454, 478, 668, 860
CviQI GTAC 4 cut(s) 130, 595, 622, 807
DdeI CTNAG 3 cut(s) 104, 501, 570
DpnI GATC 3 cut(s) 71, 136, 296
DpnII GATC 3 cut(s) 69, 134, 294
DraIII CACNNNGTG 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 422, 895
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 3 cut(s) 55, 100, 212
Eco57I CTGAAG 1 cut(s) 545
EcoT14I CCWWGG 2 cut(s) 422, 895
EcoT22I ATGCAT 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 422, 895
FaeI CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 671, 863
FatI CATG 8 cut(s) 96, 137, 277, 433, 453, 477, 667, 859
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 486, 665
FokI GGATG 3 cut(s) 418, 508, 731
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 486, 665
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 486, 665
GsuI CTGGAG 1 cut(s) 838
HaeIII GGCC 2 cut(s) 320, 915
HapII CCGG 1 cut(s) 515
Hin1II CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 671, 863
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 2 cut(s) 443, 731
HpaI GTTAAC 1 cut(s) 550
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 344, 484, 744
Hpy166II GTNNAC 3 cut(s) 475, 550, 597
Hpy188I TCNGA 2 cut(s) 105, 448
Hpy188III TCNNGA 5 cut(s) 298, 434, 639, 706, 868
Hpy8I GTNNAC 3 cut(s) 475, 550, 597
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 4 cut(s) 120, 353, 463, 591
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 401, 645, 851, 931, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 774
HpyF3I CTNAG 3 cut(s) 104, 501, 570
Hsp92II CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 671, 863
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 3 cut(s) 69, 134, 294
LmnI GCTCC 3 cut(s) 161, 539, 819
LpnPI CCDG 8 cut(s) 138, 387, 528, 674, 708, 768, 802, 881
Lsp1109I GCAGC 2 cut(s) 497, 676
LweI GCATC 1 cut(s) 632
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 899
MalI GATC 3 cut(s) 71, 136, 296
MbiI CCGCTC 1 cut(s) 161
MboI GATC 3 cut(s) 69, 134, 294
MboII GAAGA 4 cut(s) 538, 726, 733, 946
MfeI CAATTG 2 cut(s) 543, 917
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 9 cut(s) 5, 14, 73, 168, 263, 323, 543, 672, 917
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 6 cut(s) 265, 328, 349, 430, 600, 905
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 647
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 266, 393, 549
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 2 cut(s) 543, 917
Mva1269I GAATGC 2 cut(s) 525, 777
MvnI CGCG 1 cut(s) 707
MwoI GCNNNNNNNGC 1 cut(s) 774
NciI CCSGG 1 cut(s) 516
NdeII GATC 3 cut(s) 69, 134, 294
NlaIII CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 671, 863
NlaIV GGNNCC 3 cut(s) 157, 693, 821
NruI TCGCGA 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 647
PagI TCATGA 1 cut(s) 433
PctI GAATGC 2 cut(s) 525, 777
PfeI GAWTC 2 cut(s) 443, 731
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 2 cut(s) 487, 666
PspN4I GGNNCC 3 cut(s) 157, 693, 821
RruI TCGCGA 1 cut(s) 707
RsaI GTAC 4 cut(s) 131, 596, 623, 808
RsaNI GTAC 4 cut(s) 130, 595, 622, 807
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 266, 393, 549
SatI GCNGC 2 cut(s) 486, 665
Sau3AI GATC 3 cut(s) 69, 134, 294
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 375
SetI ASST 9 cut(s) 112, 253, 257, 346, 428, 441, 474, 627, 693
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 2 cut(s) 39, 968
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 3 cut(s) 122, 162, 637
SmoI CTYRAG 3 cut(s) 122, 162, 637
Sse9I AATT 9 cut(s) 5, 14, 73, 168, 263, 323, 543, 672, 917
SsiI CCGC 2 cut(s) 159, 873
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 2 cut(s) 422, 895
TaaI ACNGT 1 cut(s) 633
TaqI TCGA 1 cut(s) 375
TasI AATT 9 cut(s) 5, 14, 73, 168, 263, 323, 543, 672, 917
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 2 cut(s) 443, 731
Tru1I TTAA 3 cut(s) 266, 393, 549
Tru9I TTAA 3 cut(s) 266, 393, 549
TscAI CASTG 3 cut(s) 157, 574, 689
TseI GCWGC 2 cut(s) 485, 664
TspDTI ATGAA 5 cut(s) 10, 276, 422, 482, 733
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 3 cut(s) 157, 574, 689
XapI RAATTY 1 cut(s) 14
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.