pycom13g09290

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001251
Physical Location & Seq
Reverse (-)
6227091 .. 6228364
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09290.2

Sequence Viewer

Length: 951 bp
ATGGAACTGCATGAGCTTTTCATAGCGGCAGCAAGCACTTTAGGATTCATCTCTCTTTGCAAATCCTCCTTCAATTTTCTCAGGTGGGTATGGGTCATGTTCTTGAGACCCCCAAAGAATCTCAAGGAGTATGGCTCCTGGGCTCTCATTACGGGCTCTGCTGATGGTATCGGTAGAGCCCTTGCCTTCGAAATGGCTTCAAAGGGTCTTAACCTAGTCTTGCTTGATCGAAACACTTCAAAGCTTGAAGCTACCTCCAACGAATTACGTGAAAAATATGGTGGACAAATTGATGTTAAGAACATTGTTATGGACTTGTCCAAGTTTAGTGGGGAGGAAATAGCCGATGCCATACAGGAAGAGATAAAAGGGCTCGATGTCGGTATTTTGGTAAATAACGCAGGAGTGGCTTACAGATTTGGTAAGTTCCTCCATGAGGTGGATGACTTGGAGGTGATGGAGAGCATAAAGGTGAACATGGAGGCTGCGACGTGGATCACTAGGGCATTGCTTCCAGGTATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATCTTGGCTCTGCCTCTCATGCGGTCCCTTCTTTTCCTCTATTCACTAATTATGCTTCTTCCAAATCGTACCTTTCAATGTTGTCAAGAAGCATTAGTTTGGAATACAAGCAGCATGGAATTGACATTCAGTGCCAGATTCCTATGTTCGTGGCAACAAAGCTGACAATGGTTAAGGCAACTCCCTTCTTCTTCCCATCACCAGAGACGTACGGCAAGGCAAGCATGCGATGGATTGGCTATGAGCACCATTGTTCGCCCTACTGGGGGCACTCTGTGCAGTGGCTCATAGTACGTACATTGCCCGATGCGTTTGTGAGTGCTGTGTGTTTTTGGTACACCCTTCGGTTGCGAAAGATTGGCCAATTGAAAAGGATGCAACCAACAACACGAATACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.62

Weight (kDa)

9.3

Isoelectric Point (pI)

25.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AciI CCGC 2 cut(s) 26, 572
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 910
AdeI CACNNNGTG 1 cut(s) 826
AfaI GTAC 5 cut(s) 620, 761, 843, 847, 887
AfiI CCNNNNNNNGG 4 cut(s) 436, 439, 815, 816
AgsI TTSAA 6 cut(s) 73, 201, 240, 248, 627, 919
AjiI CACGTC 1 cut(s) 492
AjnI CCWGG 2 cut(s) 137, 514
AluBI AGCT 4 cut(s) 16, 244, 251, 712
AluI AGCT 4 cut(s) 16, 244, 251, 712
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 2 cut(s) 100, 749
AlwI GGATC 1 cut(s) 503
AoxI GGCC 1 cut(s) 910
ApeKI GCWGC 3 cut(s) 29, 485, 661
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 3 cut(s) 466, 484, 741
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 822
BalI TGGCCA 1 cut(s) 912
BanII GRGCYC 4 cut(s) 145, 158, 181, 375
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 41, 472, 673
BccI CCATC 4 cut(s) 158, 451, 754, 774
BceAI ACGGC 1 cut(s) 778
BciT130I CCWGG 2 cut(s) 139, 516
BcoDI GTCTC 2 cut(s) 100, 749
BfaI CTAG 2 cut(s) 215, 501
BisI GCNGC 4 cut(s) 27, 30, 486, 662
BlsI GCNGC 4 cut(s) 28, 31, 487, 663
Bme1390I CCNGG 2 cut(s) 139, 516
Bme18I GGWCC 1 cut(s) 574
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 2 cut(s) 136, 576
BmrFI CCNGG 2 cut(s) 139, 516
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 3 cut(s) 337, 847, 915
BmuI ACTGGG 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 3 cut(s) 107, 124, 509
BsaAI YACGTR 2 cut(s) 269, 845
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 439, 815, 816
Bse1I ACTGG 1 cut(s) 818
Bse3DI GCAATG 2 cut(s) 506, 848
BseBI CCWGG 2 cut(s) 139, 516
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 448, 930
BseLI CCNNNNNNNGG 4 cut(s) 436, 439, 815, 816
BseMI GCAATG 2 cut(s) 506, 848
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 822
BseXI GCAGC 3 cut(s) 41, 472, 673
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 798
BsiWI CGTACG 1 cut(s) 759
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 4 cut(s) 436, 439, 815, 816
BsmAI GTCTC 2 cut(s) 100, 749
BsmBI CGTCTC 1 cut(s) 749
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 1 cut(s) 912
Bso31I GGTCTC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 6 cut(s) 145, 158, 181, 375, 798, 822
Bsp143I GATC 2 cut(s) 226, 495
BspACI CCGC 2 cut(s) 26, 572
BspANI GGCC 1 cut(s) 912
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 136, 576
BspPI GGATC 1 cut(s) 503
BspT104I TTCGAA 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 506, 848
BsrI ACTGG 1 cut(s) 818
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 226, 495
Bst2UI CCWGG 2 cut(s) 139, 516
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 826
BstBAI YACGTR 2 cut(s) 269, 845
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 34, 772, 776
BstDEI CTNAG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 448, 930
BstKTI GATC 2 cut(s) 229, 498
BstMAI GTCTC 2 cut(s) 100, 749
BstMBI GATC 2 cut(s) 226, 495
BstMWI GCNNNNNNNGC 4 cut(s) 407, 569, 771, 826
BstNI CCWGG 2 cut(s) 139, 516
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 2 cut(s) 137, 514
BstSLI GKGCMC 1 cut(s) 822
BstSNI TACGTA 1 cut(s) 845
BstV1I GCAGC 3 cut(s) 41, 472, 673
BsuRI GGCC 1 cut(s) 912
BtgZI GCGATG 1 cut(s) 793
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 2 cut(s) 448, 930
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 2 cut(s) 686, 836
Cac8I GCNNGC 3 cut(s) 34, 772, 776
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 5 cut(s) 619, 760, 842, 846, 886
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 7 cut(s) 11, 97, 434, 478, 569, 665, 775
CviQI GTAC 5 cut(s) 619, 760, 842, 846, 886
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 228, 497
DpnII GATC 2 cut(s) 226, 495
DraIII CACNNNGTG 1 cut(s) 826
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco105I TACGTA 1 cut(s) 845
Eco24I GRGCYC 4 cut(s) 145, 158, 181, 375
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 574
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 137, 514
EcoT38I GRGCYC 4 cut(s) 145, 158, 181, 375
Esp3I CGTCTC 1 cut(s) 749
FaeI CATG 7 cut(s) 14, 100, 437, 481, 572, 668, 778
FaqI GGGAC 1 cut(s) 560
FatI CATG 7 cut(s) 10, 96, 433, 477, 568, 664, 774
Fnu4HI GCNGC 4 cut(s) 27, 30, 486, 662
FokI GGATG 2 cut(s) 455, 937
FriOI GRGCYC 4 cut(s) 145, 158, 181, 375
Fsp4HI GCNGC 4 cut(s) 27, 30, 486, 662
FspBI CTAG 2 cut(s) 215, 501
GluI GCNGC 4 cut(s) 27, 30, 486, 662
HaeIII GGCC 1 cut(s) 912
Hin1II CATG 7 cut(s) 14, 100, 437, 481, 572, 668, 778
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 45, 118, 688
HphI GGTGA 3 cut(s) 466, 484, 741
Hpy166II GTNNAC 3 cut(s) 284, 475, 888
Hpy188III TCNNGA 3 cut(s) 103, 526, 636
Hpy8I GTNNAC 3 cut(s) 284, 475, 888
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 5 cut(s) 79, 196, 588, 745, 902
HpyCH4IV ACGT 4 cut(s) 268, 491, 758, 844
HpyCH4V TGCA 4 cut(s) 10, 60, 829, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 569, 771, 826
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 4 cut(s) 268, 491, 758, 844
Hsp92II CATG 7 cut(s) 14, 100, 437, 481, 572, 668, 778
Kzo9I GATC 2 cut(s) 226, 495
LmnI GCTCC 2 cut(s) 140, 539
Lsp1109I GCAGC 3 cut(s) 41, 472, 673
LweI GCATC 3 cut(s) 337, 847, 915
MaeI CTAG 2 cut(s) 215, 501
MaeII ACGT 4 cut(s) 268, 491, 758, 844
MalI GATC 2 cut(s) 228, 497
MboI GATC 2 cut(s) 226, 495
MboII GAAGA 6 cut(s) 371, 541, 544, 600, 730, 733
MfeI CAATTG 2 cut(s) 543, 914
MhlI GDGCHC 6 cut(s) 145, 158, 181, 375, 798, 822
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 7 cut(s) 73, 263, 288, 543, 598, 669, 914
MluNI TGGCCA 1 cut(s) 912
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 9 cut(s) 76, 265, 328, 430, 440, 445, 475, 574, 597
Mox20I TGGCCA 1 cut(s) 912
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 912
MseI TTAA 3 cut(s) 210, 297, 723
MslI CAYNNNNRTG 2 cut(s) 308, 470
Msp20I TGGCCA 1 cut(s) 912
MspR9I CCNGG 2 cut(s) 139, 516
MunI CAATTG 2 cut(s) 543, 914
MvaI CCWGG 2 cut(s) 139, 516
MwoI GCNNNNNNNGC 4 cut(s) 407, 569, 771, 826
NdeII GATC 2 cut(s) 226, 495
NlaIII CATG 7 cut(s) 14, 100, 437, 481, 572, 668, 778
NlaIV GGNNCC 2 cut(s) 136, 576
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 189
PaeI GCATGC 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 45, 118, 688
Pfl23II CGTACG 1 cut(s) 759
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 4 cut(s) 28, 31, 487, 663
Ppu21I YACGTR 2 cut(s) 269, 845
Psp6I CCWGG 2 cut(s) 137, 514
PspGI CCWGG 2 cut(s) 137, 514
PspLI CGTACG 1 cut(s) 759
PspN4I GGNNCC 2 cut(s) 136, 576
PspPI GGNCC 1 cut(s) 574
RsaI GTAC 5 cut(s) 620, 761, 843, 847, 887
RsaNI GTAC 5 cut(s) 619, 760, 842, 846, 886
RseI CAYNNNNRTG 2 cut(s) 308, 470
SaqAI TTAA 3 cut(s) 210, 297, 723
SatI GCNGC 4 cut(s) 27, 30, 486, 662
Sau3AI GATC 2 cut(s) 226, 495
Sau96I GGNCC 1 cut(s) 574
ScrFI CCNGG 2 cut(s) 139, 516
SduI GDGCHC 6 cut(s) 145, 158, 181, 375, 798, 822
SfaNI GCATC 3 cut(s) 337, 847, 915
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 574
SmiMI CAYNNNNRTG 2 cut(s) 308, 470
SmlI CTYRAG 3 cut(s) 103, 122, 524
SmoI CTYRAG 3 cut(s) 103, 122, 524
SnaBI TACGTA 1 cut(s) 845
SphI GCATGC 1 cut(s) 778
Sse9I AATT 7 cut(s) 73, 263, 288, 543, 598, 669, 914
SsiI CCGC 2 cut(s) 26, 572
SspMI CTAG 2 cut(s) 215, 501
StyD4I CCNGG 2 cut(s) 137, 514
TaiI ACGT 4 cut(s) 271, 494, 761, 847
TaqI TCGA 3 cut(s) 189, 229, 375
TasI AATT 7 cut(s) 73, 263, 288, 543, 598, 669, 914
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 3 cut(s) 45, 118, 688
Tru1I TTAA 3 cut(s) 210, 297, 723
Tru9I TTAA 3 cut(s) 210, 297, 723
TscAI CASTG 2 cut(s) 686, 836
TseI GCWGC 3 cut(s) 29, 485, 661
TspDTI ATGAA 2 cut(s) 10, 37
TspRI CASTG 2 cut(s) 686, 836
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 434
XceI RCATGY 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 215, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.