RchiOBHm_Chr4g0432171

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001251
Physical Location & Seq
Forward (+)
56366645 .. 56368681
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40081

Sequence Viewer

Length: 963 bp
ATGGAATTGCAAGAAGCTTTCATCGTCACAGCAAGTTGTCTAGGCTTCATCTCTGTTTGTAAAGCTTTGGTCAATTTTTTGAGATGGGTGTGGGTCATGTTTCTGAGATCCCCCAAGAATCTCAAGGAGTATGGATCTTGGGCAATCATCACTGGCTCCACTGATGGAATTGGCAAAGCCCTTGCCTTTGAACTGGCTTCGAAGGGTCTCAACATCGTCTTGGTTGGTCGAAACCCTTTGAAGCTCGAAGCTACCTCCAATGAAATCCGCGAGAAATACAGTCATAAACAAGTGGAAATTAAGAGCATTGTCGTCGACTTGTCCAAAGCTAGTGGGAAGGAAATAGCTAGGACCATAAAGGAAGGAATCAAAGGTCTTGATGTTGGCATTTTGATTAATAATGCAGGGATGTCTTACCCTTTTGCAAGGTTCTTTCATGAGGTTGATTCGGAGCTGATGGAGAACATGTTAAAGGTGAACATGGAAGCCCCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATCGGCTCTGCTTCCTCCAAGCACCCTTCTCTGCCCCTCTACACACTATATGCTGCTACCAAATTGTACATTAAAATTTTCGCAAGATGCATTAATTTGGAATACAAGCAGCATGGAATTGATATTCAGTGTCAGGTGCCTCATTTCGTGGCGACGAAGATGACAGAGGATTTGAAGAAGTCGGTTCCCTTGGTAGTGGCAACACTGGAGAGATTCACGAAAGCAAGCATTCGATGTATTGGTTATGAGCATCTATGTAATCCCTACTGGTTGCATTCAGTGGAGTGGTCCATAGTACATGCAGCTCCTGATGCATTAGTTAATGCCATCACGTTTTGGATCTGCAGAGGGATCAGAAAGAGCGGCCAAATGAAGGAGTGCGTCACAGTAAAAAGATGCAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

320

Amino Acids

35.81

Weight (kDa)

9.39

Isoelectric Point (pI)

23.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 245 5.7e-42 short chain dehydrogenase
adh_short_C2 PF13561 54 - 246 1.1e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 918
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 268, 918
AclWI GGATC 4 cut(s) 102, 142, 902, 914
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 630
AfaI GTAC 2 cut(s) 623, 852
AfiI CCNNNNNNNGG 3 cut(s) 495, 496, 928
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 191, 241, 730
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 8 cut(s) 17, 65, 244, 251, 329, 347, 454, 860
AluI AGCT 8 cut(s) 17, 65, 244, 251, 329, 347, 454, 860
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 4 cut(s) 102, 142, 902, 914
AlwNI CAGNNNCTG 1 cut(s) 863
AoxI GGCC 1 cut(s) 919
ApeKI GCWGC 3 cut(s) 608, 664, 857
ApoI RAATTY 1 cut(s) 630
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AseI ATTAAT 2 cut(s) 396, 648
AspS9I GGNCC 2 cut(s) 351, 843
AsuHPI GGTGA 2 cut(s) 487, 511
AsuII TTCGAA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 351, 843
BanI GGYRCC 1 cut(s) 691
BbvI GCAGC 3 cut(s) 595, 676, 869
BccI CCATC 4 cut(s) 78, 158, 451, 890
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 4 cut(s) 41, 330, 348, 504
BfmI CTRYAG 1 cut(s) 898
BisI GCNGC 4 cut(s) 609, 665, 858, 919
BlsI GCNGC 4 cut(s) 610, 666, 859, 920
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 2 cut(s) 351, 843
BmgT120I GGNCC 2 cut(s) 351, 843
BmiI GGNNCC 3 cut(s) 157, 693, 741
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 632, 814, 856, 941
BpmI CTGGAG 1 cut(s) 782
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 107, 512
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 744
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 495, 496, 928
Bse1I ACTGG 4 cut(s) 157, 198, 765, 827
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 495, 496, 928
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 4 cut(s) 157, 198, 765, 827
BseXI GCAGC 3 cut(s) 595, 676, 869
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 921
BshNI GGYRCC 1 cut(s) 691
BslI CCNNNNNNNGG 3 cut(s) 495, 496, 928
BsmAI GTCTC 1 cut(s) 212
BsmI GAATGC 3 cut(s) 528, 783, 829
BsnI GGCC 1 cut(s) 921
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 4 cut(s) 107, 134, 894, 906
BspACI CCGC 2 cut(s) 268, 918
BspANI GGCC 1 cut(s) 921
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 157, 693, 741
BspMAI CTGCAG 1 cut(s) 902
BspPI GGATC 4 cut(s) 102, 142, 902, 914
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 918
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 4 cut(s) 157, 198, 765, 827
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 4 cut(s) 107, 134, 894, 906
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 281, 943
BstAUI TGTACA 1 cut(s) 621
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 4 cut(s) 110, 137, 897, 909
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 4 cut(s) 107, 134, 894, 906
BstMWI GCNNNNNNNGC 1 cut(s) 866
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 2 cut(s) 469, 857
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 595, 676, 869
BstX2I RGATCY 3 cut(s) 107, 134, 894
BstYI RGATCY 3 cut(s) 107, 134, 894
BsuRI GGCC 1 cut(s) 921
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 6 cut(s) 150, 159, 516, 689, 758, 840
Cac8I GCNNGC 1 cut(s) 781
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 351, 843
CseI GACGC 1 cut(s) 925
Csp6I GTAC 2 cut(s) 622, 851
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 6 cut(s) 97, 437, 466, 481, 668, 854
CviQI GTAC 2 cut(s) 622, 851
DdeI CTNAG 1 cut(s) 104
DpnI GATC 4 cut(s) 109, 136, 896, 908
DpnII GATC 4 cut(s) 107, 134, 894, 906
EaeI YGGCCR 1 cut(s) 919
Eco130I CCWWGG 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 351, 843
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 744
EcoT22I ATGCAT 2 cut(s) 647, 871
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 6 cut(s) 100, 440, 469, 484, 671, 857
FatI CATG 6 cut(s) 96, 436, 465, 480, 667, 853
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 609, 665, 858, 919
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 609, 665, 858, 919
FspBI CTAG 4 cut(s) 41, 330, 348, 504
GluI GCNGC 4 cut(s) 609, 665, 858, 919
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 1 cut(s) 921
HgaI GACGC 1 cut(s) 925
Hin1II CATG 6 cut(s) 100, 440, 469, 484, 671, 857
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 15, 63
HinfI GANTC 4 cut(s) 118, 366, 446, 768
HphI GGTGA 2 cut(s) 487, 511
Hpy166II GTNNAC 2 cut(s) 316, 478
Hpy188I TCNGA 3 cut(s) 105, 451, 911
Hpy188III TCNNGA 5 cut(s) 377, 437, 529, 772, 863
Hpy8I GTNNAC 2 cut(s) 316, 478
Hpy99I CGWCG 2 cut(s) 317, 712
HpyAV CCTTC 5 cut(s) 196, 331, 356, 591, 922
HpyCH4III ACNGT 2 cut(s) 281, 943
HpyCH4IV ACGT 1 cut(s) 887
HpyCH4V TGCA 9 cut(s) 10, 404, 425, 645, 829, 857, 869, 900, 954
HpyF10VI GCNNNNNNNGC 1 cut(s) 866
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 887
Hsp92II CATG 6 cut(s) 100, 440, 469, 484, 671, 857
Kzo9I GATC 4 cut(s) 107, 134, 894, 906
LmnI GCTCC 4 cut(s) 161, 451, 542, 865
LpnPI CCDG 9 cut(s) 138, 179, 390, 504, 531, 674, 746, 808, 876
Lsp1109I GCAGC 3 cut(s) 595, 676, 869
LweI GCATC 4 cut(s) 632, 814, 856, 941
MaeI CTAG 4 cut(s) 41, 330, 348, 504
MaeII ACGT 1 cut(s) 887
MaeIII GTNAC 3 cut(s) 25, 499, 937
MalI GATC 4 cut(s) 109, 136, 896, 908
MbiI CCGCTC 1 cut(s) 918
MboI GATC 4 cut(s) 107, 134, 894, 906
MboII GAAGA 4 cut(s) 544, 547, 724, 742
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 3 cut(s) 107, 134, 894
MnlI CCTC 7 cut(s) 265, 433, 580, 602, 705, 715, 896
Mph1103I ATGCAT 2 cut(s) 647, 871
MseI TTAA 7 cut(s) 300, 396, 470, 627, 648, 876, 961
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 3 cut(s) 528, 783, 829
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 866
NdeII GATC 4 cut(s) 107, 134, 894, 906
NlaIII CATG 6 cut(s) 100, 440, 469, 484, 671, 857
NlaIV GGNNCC 3 cut(s) 157, 693, 741
NmuCI GTSAC 3 cut(s) 25, 499, 937
NsiI ATGCAT 2 cut(s) 647, 871
NspI RCATGY 2 cut(s) 469, 857
NspV TTCGAA 1 cut(s) 200
PagI TCATGA 1 cut(s) 436
PciI ACATGT 1 cut(s) 465
PctI GAATGC 3 cut(s) 528, 783, 829
PfeI GAWTC 4 cut(s) 118, 366, 446, 768
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 4 cut(s) 610, 666, 859, 920
PscI ACATGT 1 cut(s) 465
PshBI ATTAAT 2 cut(s) 396, 648
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 3 cut(s) 157, 693, 741
PspPI GGNCC 2 cut(s) 351, 843
PstI CTGCAG 1 cut(s) 902
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 3 cut(s) 107, 134, 894
RsaI GTAC 2 cut(s) 623, 852
RsaNI GTAC 2 cut(s) 622, 851
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 7 cut(s) 300, 396, 470, 627, 648, 876, 961
SatI GCNGC 4 cut(s) 609, 665, 858, 919
Sau3AI GATC 4 cut(s) 107, 134, 894, 906
Sau96I GGNCC 2 cut(s) 351, 843
ScrFI CCNGG 1 cut(s) 519
SfaNI GCATC 4 cut(s) 632, 814, 856, 941
SfcI CTRYAG 1 cut(s) 898
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 2 cut(s) 351, 843
SmlI CTYRAG 2 cut(s) 122, 527
SmoI CTYRAG 2 cut(s) 122, 527
SsiI CCGC 2 cut(s) 268, 918
SspMI CTAG 4 cut(s) 41, 330, 348, 504
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 2 cut(s) 281, 943
TaiI ACGT 1 cut(s) 890
TaqI TCGA 5 cut(s) 200, 229, 246, 315, 787
TatI WGTACW 2 cut(s) 621, 850
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 4 cut(s) 118, 366, 446, 768
Tru1I TTAA 7 cut(s) 300, 396, 470, 627, 648, 876, 961
Tru9I TTAA 7 cut(s) 300, 396, 470, 627, 648, 876, 961
TscAI CASTG 6 cut(s) 157, 166, 516, 689, 765, 840
TseFI GTSAC 3 cut(s) 25, 499, 937
TseI GCWGC 3 cut(s) 608, 664, 857
Tsp45I GTSAC 3 cut(s) 25, 499, 937
TspDTI ATGAA 5 cut(s) 10, 37, 276, 425, 941
TspRI CASTG 6 cut(s) 157, 166, 516, 689, 765, 840
VpaK11BI GGWCC 2 cut(s) 351, 843
VspI ATTAAT 2 cut(s) 396, 648
XapI RAATTY 1 cut(s) 630
XceI RCATGY 2 cut(s) 469, 857
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 4 cut(s) 41, 330, 348, 504
Zsp2I ATGCAT 2 cut(s) 647, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.