RLG00000006864

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001251
Physical Location & Seq
Reverse (-)
11210302 .. 11212661
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006864

Sequence Viewer

Length: 783 bp
ATGGCAATGAAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTCTGTAGAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACCGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCAAAGGGTCTTAACCTTGTTCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATACATGGAGAATTTGGTGGAAAAGTCGAGATTAAGAGCATGGTGATCGACTTAGCCAAATTGAGTGGGGAGGAAATAGCTAATGCCATAGAGGAAGGGATAAAAGGGCTAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGCTTACCCTTATGCTAGGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGACTCCTCTTTTCGTTGCAACGAGGTTGACAAAACATGTCAAGGGACCTTCCTGGTTGATGGCATCACCAGAGAAATTTAGCAAAGCAAGCGTTCGCTGGATTGGTTATGAGCCTCTGTGTAATCCTTACTGGTGGCACTCTGTGCTGTGGTTCATATTACGTGTGGCCTCGCCGGATGTGTTATTGAATGCCATCAGTTATTGGATCGGCATTCGGATCAGAAAGAGAGGCCAAATGAAGGAGGCACAGAGCAAGATGCATCAGCAGGAAAATGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

261

Amino Acids

29.14

Weight (kDa)

9.24

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 139 7.6e-13 short chain dehydrogenase
adh_short_C2 PF13561 54 - 179 3.9e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 713, 725
AcsI RAATTY 2 cut(s) 281, 575
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 1 cut(s) 434
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 739
AflIII ACRYGT 2 cut(s) 535, 661
AgsI TTSAA 2 cut(s) 207, 688
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 4 cut(s) 71, 257, 350, 416
AluI AGCT 4 cut(s) 71, 257, 350, 416
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 713, 725
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 2 cut(s) 666, 730
ApeKI GCWGC 2 cut(s) 35, 475
ApoI RAATTY 2 cut(s) 281, 575
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 3 cut(s) 148, 325, 558
AvaII GGWCC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 47, 487
BccI CCATC 3 cut(s) 84, 553, 701
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 380, 429
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 2 cut(s) 36, 476
BlsI GCNGC 2 cut(s) 37, 477
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 553
BmsI GCATC 4 cut(s) 443, 572, 747, 769
BpuEI CTTGAG 3 cut(s) 113, 153, 433
BsaAI YACGTR 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 2 cut(s) 47, 487
BshFI GGCC 2 cut(s) 668, 732
BsiSI CCGG 2 cut(s) 159, 674
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 558
BsmI GAATGC 2 cut(s) 694, 711
BsnI GGCC 2 cut(s) 668, 732
Bso31I GGTCTC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 315, 705, 717
BspANI GGCC 2 cut(s) 668, 732
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 2 cut(s) 713, 725
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 315, 705, 717
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 189, 589
BstDEI CTNAG 2 cut(s) 110, 322
BstF5I GGATG 1 cut(s) 682
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 318, 708, 720
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 315, 705, 717
BstMWI GCNNNNNNNGC 4 cut(s) 254, 413, 588, 643
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 47, 487
BsuRI GGCC 2 cut(s) 668, 732
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 2 cut(s) 189, 589
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 545
Csp6I GTAC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 5 cut(s) 103, 275, 310, 442, 536
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 110, 322
DpnI GATC 3 cut(s) 317, 707, 719
DpnII GATC 3 cut(s) 315, 705, 717
DraIII CACNNNGTG 1 cut(s) 643
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 545
Eco47III AGCGCT 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 3 cut(s) 458, 762, 778
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 5 cut(s) 106, 278, 313, 445, 539
FaqI GGGAC 1 cut(s) 558
FatI CATG 5 cut(s) 102, 274, 309, 441, 535
Fnu4HI GCNGC 2 cut(s) 36, 476
FokI GGATG 1 cut(s) 689
Fsp4HI GCNGC 2 cut(s) 36, 476
FspBI CTAG 2 cut(s) 380, 429
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 36, 476
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 2 cut(s) 668, 732
HapII CCGG 2 cut(s) 159, 674
HhaI GCGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 106, 278, 313, 445, 539
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 124, 502
HpaII CCGG 2 cut(s) 159, 674
HphI GGTGA 3 cut(s) 148, 325, 558
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 5 cut(s) 111, 228, 501, 717, 722
Hpy188III TCNNGA 2 cut(s) 298, 450
Hpy8I GTNNAC 1 cut(s) 528
HpyAV CCTTC 4 cut(s) 14, 359, 558, 733
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 7 cut(s) 16, 45, 407, 456, 518, 760, 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 413, 588, 643
HpyF3I CTNAG 2 cut(s) 110, 322
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 5 cut(s) 106, 278, 313, 445, 539
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 315, 705, 717
Lsp1109I GCAGC 2 cut(s) 47, 487
LweI GCATC 4 cut(s) 443, 572, 747, 769
MaeI CTAG 2 cut(s) 380, 429
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 317, 707, 719
MboI GATC 3 cut(s) 315, 705, 717
MluCI AATT 6 cut(s) 11, 174, 281, 329, 483, 575
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 9 cut(s) 271, 334, 355, 516, 516, 624, 679, 722, 736
Mph1103I ATGCAT 3 cut(s) 458, 762, 778
MseI TTAA 3 cut(s) 216, 303, 399
MslI CAYNNNNRTG 1 cut(s) 440
MspI CCGG 2 cut(s) 159, 674
MspR9I CCNGG 1 cut(s) 553
Mva1269I GAATGC 2 cut(s) 694, 711
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 4 cut(s) 254, 413, 588, 643
NdeII GATC 3 cut(s) 315, 705, 717
NlaIII CATG 5 cut(s) 106, 278, 313, 445, 539
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 3 cut(s) 458, 762, 778
NspI RCATGY 1 cut(s) 539
PciI ACATGT 1 cut(s) 535
PctI GAATGC 2 cut(s) 694, 711
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 37, 477
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Ppu21I YACGTR 1 cut(s) 662
PpuMI RGGWCCY 1 cut(s) 545
PscI ACATGT 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 545
PspPPI RGGWCCY 1 cut(s) 545
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 3 cut(s) 216, 303, 399
SatI GCNGC 2 cut(s) 36, 476
Sau3AI GATC 3 cut(s) 315, 705, 717
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 553
SfaNI GCATC 4 cut(s) 443, 572, 747, 769
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 128, 168, 448
SmoI CTYRAG 3 cut(s) 128, 168, 448
Sse9I AATT 6 cut(s) 11, 174, 281, 329, 483, 575
SspMI CTAG 2 cut(s) 380, 429
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 664
TaqI TCGA 3 cut(s) 252, 297, 318
TasI AATT 6 cut(s) 11, 174, 281, 329, 483, 575
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 3 cut(s) 216, 303, 399
Tru9I TTAA 3 cut(s) 216, 303, 399
TscAI CASTG 1 cut(s) 500
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 35, 475
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 7 cut(s) 16, 23, 43, 64, 282, 643, 752
TspRI CASTG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 2 cut(s) 281, 575
XceI RCATGY 1 cut(s) 539
XspI CTAG 2 cut(s) 380, 429
Zsp2I ATGCAT 3 cut(s) 458, 762, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.