Rorug04G0255100

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001251
Physical Location & Seq
Reverse (-)
42781397 .. 42782398
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0255100.1

Sequence Viewer

Length: 1002 bp
ATGATGTTGGTTGGTACGACTCCTCAATTTTGGAAGCGAATCTGGCAAGCTAAGGTTCCAGCTACTGCTAAAGTCAATATGTGGAAGATTTGTCACAATATTCTTCCTTCTCTGGAAAGGTTAGTGACAAAACATGTTACTCTTGATTCACAACTGTGTGTACTTTGCATTGGGAGGATTGAATCTACCTTGCACTTGTGCCTGGATTGTAACTTTACTCGTGAAATTTTGCGTTCAAATGTTACGCTGGCTCAGGTATGTTTCACTACAGAATCAGATGGAATGGGAATTCTGGAATGGATTATGTTTTGTTCGAGTAGGTTGTCTTCAACTTTGTTTGCTCTCTTTATCTTTCTTTTGTGGAGTGTGTGGAAAGAAAGGAATACTAGAGTTTGGGAAGGTAAAGCTAGGAGTGTGGGGGATGTTGTTTTATTTTCCAATTCCAGGCTACAAGATTATATCTATCATAATTCTTGTAATCTTGATCGTGGTAGAGGAGCTGATAGGGAGGTTCGTTGGCAAAGTCCTCCAATTGGCTGTATCAAAATAAATATAGATGGGGCATTTTTGACTGCTTCTGGAGCAGGTGCCATTGGCTTGGTTTTGCGAGACAGTTCAGGAAACTTTCTTGTGAGTAAAGGAAGGCCAGTATGGGGGTTGCTCTCGGCTGAGCATGCTGAACTTCTCGCGTGTAAGGAGGCATTTGAGCTCATACTTGAGCAGTCCTTGCATCCTGCAATTATGGAGACAGATTCTTTGGTTATTAAACAGCAGCTATCTAGTTCTGGTGTTAACTTGTCTACACTGGGGCGTATATATGAAGACCTAGGAGTGTTGTTGGAAGCACTGCCTAATGTTCGGATAGTGCATACAAGAAGAGATGCAAATAAGGCAGCTCATCTAATGGCTGCACAGGCATCTGCTACGGGCCAAGATCTCTTTTATTTTTCTGTTCCTTCTTTTCTTCATGAGGTTATTACTCATGAACTTTGTGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

333

Amino Acids

37.26

Weight (kDa)

7.14

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 8 - 76 8.3e-11 zinc-binding in reverse transcriptase
RVT_3 PF13456 184 - 305 1.4e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 800
AccII CGCG 1 cut(s) 689
AcsI RAATTY 2 cut(s) 225, 288
AfaI GTAC 2 cut(s) 16, 162
AfiI CCNNNNNNNGG 3 cut(s) 444, 533, 653
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 3 cut(s) 182, 237, 330
AjnI CCWGG 2 cut(s) 201, 443
AleI CACNNNNGTG 1 cut(s) 154
AluBI AGCT 7 cut(s) 50, 62, 407, 500, 709, 775, 896
AluI AGCT 7 cut(s) 50, 62, 407, 500, 709, 775, 896
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 603, 740
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 2 cut(s) 644, 928
ApeKI GCWGC 3 cut(s) 772, 893, 908
ApoI RAATTY 2 cut(s) 225, 288
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AspA2I CCTAGG 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 928
AvrII CCTAGG 1 cut(s) 826
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 711
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BauI CACGAG 1 cut(s) 219
BbsI GAAGAC 2 cut(s) 318, 828
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 784, 895, 905
BccI CCATC 2 cut(s) 272, 551
BciT130I CCWGG 2 cut(s) 203, 445
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 2 cut(s) 603, 740
BfaI CTAG 5 cut(s) 387, 408, 780, 827, 1000
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 575
BglII AGATCT 1 cut(s) 934
BisI GCNGC 3 cut(s) 773, 894, 909
BlnI CCTAGG 1 cut(s) 826
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 3 cut(s) 774, 895, 910
Bme1390I CCNGG 2 cut(s) 203, 445
BmgT120I GGNCC 1 cut(s) 928
BmiI GGNNCC 2 cut(s) 57, 589
BmrFI CCNGG 2 cut(s) 203, 445
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 3 cut(s) 739, 871, 926
BmuI ACTGGG 1 cut(s) 815
BpiI GAAGAC 2 cut(s) 318, 828
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 2 cut(s) 51, 252
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 826
Bsc4I CCNNNNNNNGG 3 cut(s) 444, 533, 653
Bse1I ACTGG 2 cut(s) 647, 810
BseBI CCWGG 2 cut(s) 203, 445
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 2 cut(s) 427, 730
BseLI CCNNNNNNNGG 3 cut(s) 444, 533, 653
BseMII CTCAG 2 cut(s) 266, 660
BseNI ACTGG 2 cut(s) 647, 810
BseRI GAGGAG 2 cut(s) 12, 510
BseXI GCAGC 3 cut(s) 784, 895, 905
BsgI GTGCAG 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 689
BshFI GGCC 2 cut(s) 646, 930
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 1 cut(s) 711
BslI CCNNNNNNNGG 3 cut(s) 444, 533, 653
BsmAI GTCTC 2 cut(s) 603, 740
BsnI GGCC 2 cut(s) 646, 930
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 3 cut(s) 484, 934, 994
Bsp1720I GCTNAGC 1 cut(s) 669
BspANI GGCC 2 cut(s) 646, 930
BspCNI CTCAG 2 cut(s) 265, 661
BspFNI CGCG 1 cut(s) 689
BspHI TCATGA 2 cut(s) 967, 982
BspLI GGNNCC 2 cut(s) 57, 589
BspMI ACCTGC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 587
BsrI ACTGG 2 cut(s) 647, 810
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 3 cut(s) 484, 934, 994
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 203, 445
Bst4CI ACNGT 2 cut(s) 156, 614
Bst6I CTCTTC 1 cut(s) 871
BstAPI GCANNNNNTGC 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 48, 249, 675
BstDEI CTNAG 3 cut(s) 51, 252, 669
BstF5I GGATG 2 cut(s) 427, 730
BstFNI CGCG 1 cut(s) 689
BstKTI GATC 3 cut(s) 487, 937, 997
BstMAI GTCTC 2 cut(s) 603, 740
BstMBI GATC 3 cut(s) 484, 934, 994
BstMWI GCNNNNNNNGC 6 cut(s) 43, 581, 674, 727, 890, 914
BstNI CCWGG 2 cut(s) 203, 445
BstNSI RCATGY 2 cut(s) 137, 677
BstSCI CCNGG 2 cut(s) 201, 443
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 689
BstV1I GCAGC 3 cut(s) 784, 895, 905
BstV2I GAAGAC 2 cut(s) 318, 828
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 2 cut(s) 646, 930
BtsCI GGATG 2 cut(s) 427, 730
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 2 cut(s) 803, 845
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 3 cut(s) 48, 249, 675
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 2 cut(s) 967, 982
Cfr13I GGNCC 1 cut(s) 928
Csp6I GTAC 2 cut(s) 15, 161
CviAII CATG 4 cut(s) 134, 674, 968, 983
CviQI GTAC 2 cut(s) 15, 161
DdeI CTNAG 3 cut(s) 51, 252, 669
DpnI GATC 3 cut(s) 486, 936, 996
DpnII GATC 3 cut(s) 484, 934, 994
Eam1104I CTCTTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 871
Ecl136II GAGCTC 1 cut(s) 709
Eco130I CCWWGG 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 711
Eco53kI GAGCTC 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 201, 443
EcoT14I CCWWGG 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 4 cut(s) 137, 677, 971, 986
FatI CATG 4 cut(s) 133, 673, 967, 982
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 1 cut(s) 800
Fnu4HI GCNGC 3 cut(s) 773, 894, 909
FokI GGATG 2 cut(s) 434, 717
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 773, 894, 909
FspBI CTAG 5 cut(s) 387, 408, 780, 827, 1000
GluI GCNGC 3 cut(s) 773, 894, 909
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 646, 930
Hin1II CATG 4 cut(s) 137, 677, 971, 986
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 6 cut(s) 19, 39, 146, 182, 272, 752
HpaI GTTAAC 1 cut(s) 793
Hpy166II GTNNAC 3 cut(s) 161, 793, 801
Hpy188I TCNGA 2 cut(s) 277, 861
Hpy188III TCNNGA 9 cut(s) 113, 143, 221, 293, 482, 579, 618, 968, 983
Hpy8I GTNNAC 3 cut(s) 161, 793, 801
HpyAV CCTTC 4 cut(s) 117, 392, 636, 966
HpyCH4III ACNGT 2 cut(s) 156, 614
HpyCH4V TGCA 7 cut(s) 168, 193, 730, 737, 868, 884, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 581, 674, 727, 890, 914
HpyF3I CTNAG 3 cut(s) 51, 252, 669
Hsp92II CATG 4 cut(s) 137, 677, 971, 986
Ksp22I TGATCA 1 cut(s) 994
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 3 cut(s) 484, 934, 994
LmnI GCTCC 2 cut(s) 497, 581
Lsp1109I GCAGC 3 cut(s) 784, 895, 905
LweI GCATC 3 cut(s) 739, 871, 926
MaeI CTAG 5 cut(s) 387, 408, 780, 827, 1000
MaeIII GTNAC 5 cut(s) 92, 124, 136, 209, 241
MalI GATC 3 cut(s) 486, 936, 996
MboI GATC 3 cut(s) 484, 934, 994
MboII GAAGA 6 cut(s) 95, 97, 318, 833, 888, 956
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 7 cut(s) 26, 225, 288, 439, 469, 531, 738
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 819
MnlI CCTC 7 cut(s) 33, 168, 488, 502, 537, 691, 964
MseI TTAA 2 cut(s) 765, 792
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 203, 445
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 2 cut(s) 203, 445
MvnI CGCG 1 cut(s) 689
MwoI GCNNNNNNNGC 6 cut(s) 43, 581, 674, 727, 890, 914
NdeII GATC 3 cut(s) 484, 934, 994
NlaIII CATG 4 cut(s) 137, 677, 971, 986
NlaIV GGNNCC 2 cut(s) 57, 589
NmeAIII GCCGAG 1 cut(s) 644
NmuCI GTSAC 2 cut(s) 92, 124
NspI RCATGY 2 cut(s) 137, 677
OliI CACNNNNGTG 1 cut(s) 154
PaeI GCATGC 1 cut(s) 677
PagI TCATGA 2 cut(s) 967, 982
PaqCI CACCTGC 1 cut(s) 575
PciI ACATGT 1 cut(s) 133
PfeI GAWTC 5 cut(s) 39, 146, 182, 272, 752
PkrI GCNGC 3 cut(s) 774, 895, 910
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 201, 443
PspGI CCWGG 2 cut(s) 201, 443
PspN4I GGNNCC 2 cut(s) 57, 589
PspPI GGNCC 1 cut(s) 928
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 2 cut(s) 16, 162
RsaNI GTAC 2 cut(s) 15, 161
RseI CAYNNNNRTG 1 cut(s) 154
SacI GAGCTC 1 cut(s) 711
SaqAI TTAA 2 cut(s) 765, 792
SatI GCNGC 3 cut(s) 773, 894, 909
Sau3AI GATC 3 cut(s) 484, 934, 994
Sau96I GGNCC 1 cut(s) 928
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 203, 445
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 3 cut(s) 739, 871, 926
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SphI GCATGC 1 cut(s) 677
Sse9I AATT 7 cut(s) 26, 225, 288, 439, 469, 531, 738
SspI AATATT 1 cut(s) 100
SspMI CTAG 5 cut(s) 387, 408, 780, 827, 1000
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 201, 443
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 2 cut(s) 156, 614
TaqI TCGA 1 cut(s) 314
TasI AATT 7 cut(s) 26, 225, 288, 439, 469, 531, 738
TatI WGTACW 1 cut(s) 160
TfiI GAWTC 5 cut(s) 39, 146, 182, 272, 752
Tru1I TTAA 2 cut(s) 765, 792
Tru9I TTAA 2 cut(s) 765, 792
TscAI CASTG 2 cut(s) 810, 852
TseFI GTSAC 2 cut(s) 92, 124
TseI GCWGC 3 cut(s) 772, 893, 908
Tsp45I GTSAC 2 cut(s) 92, 124
TspDTI ATGAA 3 cut(s) 834, 956, 999
TspRI CASTG 2 cut(s) 810, 852
XapI RAATTY 2 cut(s) 225, 288
XceI RCATGY 2 cut(s) 137, 677
XmaJI CCTAGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 800
XspI CTAG 5 cut(s) 387, 408, 780, 827, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.