Rh4BG319100

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001251
Physical Location & Seq
Forward (+)
48611395 .. 48613165
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG319100.1

Sequence Viewer

Length: 627 bp
ATGGCAATGCAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACTGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCAAAGGGTCTTAACCTTGTTCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATGCATGGAGAATTTGGTGGAAAAGTCGAGATTAAGAGCATGGTGATCGACTTAGCCAAATTGAGTGGGGAGGAAATAGCTAACGCCATAGAGGAAGGGATAGAAGGGATAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGCTTACCCTTATGCTAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATTGGTTCTAATTCAGCTAACCTCCCTTCTTTTCCTCTATATACTCTTTATTCTACAACCAAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

208

Amino Acids

22.52

Weight (kDa)

6.84

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 208 3.6e-31 short chain dehydrogenase
adh_short_C2 PF13561 54 - 208 5.6e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 281
AfeI AGCGCT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 5 cut(s) 71, 257, 350, 416, 575
AluI AGCT 5 cut(s) 71, 257, 350, 416, 575
Alw26I GTCTC 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 35, 491
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 325, 490, 514
BbvI GCAGC 2 cut(s) 47, 503
BccI CCATC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 429, 507
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 2 cut(s) 36, 492
BlsI GCNGC 2 cut(s) 37, 493
Bme1390I CCNGG 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 522
BpuEI CTTGAG 3 cut(s) 113, 153, 515
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 47, 503
BsmAI GTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 531
Bso31I GGTCTC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 110, 322
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 254, 413
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 47, 503
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 156, 519
Cac8I GCNNGC 1 cut(s) 189
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 5 cut(s) 103, 275, 310, 440, 460
DdeI CTNAG 2 cut(s) 110, 322
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 106
Eco47III AGCGCT 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 5 cut(s) 106, 278, 313, 443, 463
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 5 cut(s) 102, 274, 309, 439, 459
Fnu4HI GCNGC 2 cut(s) 36, 492
Fsp4HI GCNGC 2 cut(s) 36, 492
FspBI CTAG 2 cut(s) 429, 507
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 36, 492
HaeII RGCGCY 1 cut(s) 251
HhaI GCGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 106, 278, 313, 443, 463
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 124
HphI GGTGA 3 cut(s) 325, 490, 514
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 111, 228
Hpy188III TCNNGA 3 cut(s) 298, 440, 532
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 14, 359, 368, 594
HpyCH4V TGCA 5 cut(s) 10, 16, 45, 274, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 413
HpyF3I CTNAG 2 cut(s) 110, 322
Hsp92II CATG 5 cut(s) 106, 278, 313, 443, 463
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 488, 545
LpnPI CCDG 4 cut(s) 144, 393, 507, 534
Lsp1109I GCAGC 2 cut(s) 47, 503
MaeI CTAG 2 cut(s) 429, 507
MaeIII GTNAC 2 cut(s) 154, 502
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 547, 550
MfeI CAATTG 2 cut(s) 11, 549
MluCI AATT 6 cut(s) 11, 174, 281, 329, 549, 568
MnlI CCTC 6 cut(s) 271, 334, 355, 436, 590, 603
Mph1103I ATGCAT 1 cut(s) 276
MseI TTAA 4 cut(s) 216, 303, 399, 474
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 2 cut(s) 11, 549
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 254, 413
NdeII GATC 1 cut(s) 315
NlaIII CATG 5 cut(s) 106, 278, 313, 443, 463
NmuCI GTSAC 2 cut(s) 154, 502
NsiI ATGCAT 1 cut(s) 276
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 2 cut(s) 37, 493
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
SaqAI TTAA 4 cut(s) 216, 303, 399, 474
SatI GCNGC 2 cut(s) 36, 492
Sau3AI GATC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 128, 168, 530
SmoI CTYRAG 3 cut(s) 128, 168, 530
Sse9I AATT 6 cut(s) 11, 174, 281, 329, 549, 568
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 2 cut(s) 429, 507
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 3 cut(s) 252, 297, 318
TasI AATT 6 cut(s) 11, 174, 281, 329, 549, 568
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 4 cut(s) 216, 303, 399, 474
Tru9I TTAA 4 cut(s) 216, 303, 399, 474
TscAI CASTG 2 cut(s) 163, 519
TseFI GTSAC 2 cut(s) 154, 502
TseI GCWGC 2 cut(s) 35, 491
Tsp45I GTSAC 2 cut(s) 154, 502
TspDTI ATGAA 5 cut(s) 16, 43, 64, 282, 428
TspRI CASTG 2 cut(s) 163, 519
XapI RAATTY 1 cut(s) 281
XspI CTAG 2 cut(s) 429, 507
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.