FvH4_5g00220

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000323
Physical Location & Seq
Forward (+)
150689 .. 154787
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00220.t2

Sequence Viewer

Length: 1098 bp
ATGGGGTTCCGAGACTTCCCATTTGTTGCCAAGGAAGGAGATGAAGATGGAGACCCGAGAAGATTTCCGGGTCACAGAGAAGTGTTGAAGTACTTGAATGACTTTGCTAGGGAGTTTGGGATATGTGAGATGGTGAGGTTTGAGAGTGAGGTGGTGTTTGTGGGTTTGGTGGAGGGTGGAAAGTGGAAGGTCAAGTCCAAGAACAAAAGAAGTGAGGTTGTGGAAGAGATTTATGATGCTGTGGTGGTCTGTAATGGACATCATACCGACCCTCGTGTAGCTCAGATTTCAGGCATGCATACATATAAGGGGAAGCAAATTCACAGTCACAATTATCGTACTCCTGAGCCATTTAGAGATCAGGTTGTAATTTTGATAGGCAGCGCTACTAGTGCTGTTGATATTTCTCGGGACATAGCTGGAGTTGCTAAAGAAGTACACATTGCATCTAGATCTGTTGCTGATGAAACCATAGAAAAGCACCCTGGCTATGATAACTTGTGGCTTCACTCGATGATCCAAACTGTCCATGAAGATGGTGGTGTTGCTTTTCAAGATGGAAGCGTTGTCTGTGCTGACATCATTCTTCACTGCACAGGGTACAAATATCATTTTCCCTTTCTCGAAATGGATGGCATTGTGATCGTGGATGACAACCGTGTTGGGCCACTGTACAAGCATGTCTTCCCACCAGTCTTTGCTCCTTCACTTTCCTTTGTTGGAATACCATGGAAGGACGCTCTTTTCTTCATGTTTGAACTTCAAAGCAAGTGGGTAGCCGGTATTTTGTCTAATCGAATAGCACTTCCATCCCAAGAGGACATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCGGGCACACCTAAGCGATACACTCATAACATTGCTGATCATCAGTCTGGATATGATGATTGGGTTGCAACTGAGTGTGGGTGTCCAGTCTCTGAGGAATGGAGAAAGCAAATGTACTATGCAGCTATAGAGAACATGCTAACCAAACCAGAGACATACCGAGATGAGTGGGGGGAATATGAACATTTAGTATTGCAAGCTCATGAGGACTTCAAGAAATACGCCTTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

366

Amino Acids

41.62

Weight (kDa)

5.37

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 9 - 111 1.6e-15 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 6 cut(s) 92, 340, 438, 602, 674, 980
AfeI AGCGCT 1 cut(s) 385
AgsI TTSAA 7 cut(s) 88, 97, 554, 758, 764, 860, 1078
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 6 cut(s) 281, 419, 842, 863, 989, 1064
AluI AGCT 6 cut(s) 281, 419, 842, 863, 989, 1064
Alw26I GTCTC 4 cut(s) 6, 45, 958, 1010
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 2 cut(s) 55, 408
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 1 cut(s) 665
ApeKI GCWGC 2 cut(s) 381, 986
ApoI RAATTY 1 cut(s) 318
ArsI GACNNNNNNTTYG 3 cut(s) 37, 310, 342
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 55, 408
BaeGI GKGCMC 1 cut(s) 872
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 393, 998
BccI CCATC 7 cut(s) 41, 124, 530, 551, 626, 817, 820
BcgI CGANNNNNNTGC 2 cut(s) 625, 659
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 4 cut(s) 6, 45, 958, 1010
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 3 cut(s) 108, 390, 450
BfmI CTRYAG 1 cut(s) 990
BfoI RGCGCY 1 cut(s) 387
BglII AGATCT 1 cut(s) 452
BisI GCNGC 2 cut(s) 382, 987
BlsI GCNGC 2 cut(s) 383, 988
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 69, 486
BmeT110I CYCGRG 2 cut(s) 55, 408
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 69, 486
BmsI GCATC 2 cut(s) 226, 455
BpiI GAAGAC 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 2 cut(s) 345, 876
BpuMI CCSGG 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 30, 484, 728
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 2 cut(s) 692, 950
Bse3DI GCAATG 2 cut(s) 441, 894
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 30, 484, 728
BseGI GGATG 4 cut(s) 637, 655, 809, 838
BseMI GCAATG 2 cut(s) 441, 894
BseMII CTCAG 4 cut(s) 296, 336, 927, 948
BseNI ACTGG 2 cut(s) 692, 950
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 2 cut(s) 393, 998
BsgI GTGCAG 1 cut(s) 577
BshFI GGCC 1 cut(s) 667
BsiHKCI CYCGRG 2 cut(s) 55, 408
BsiSI CCGG 2 cut(s) 68, 780
BslFI GGGAC 1 cut(s) 425
BsmAI GTCTC 4 cut(s) 6, 45, 958, 1010
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 667
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 2 cut(s) 55, 408
Bsp1286I GDGCHC 1 cut(s) 872
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 5 cut(s) 358, 452, 516, 642, 901
Bsp19I CCATGG 1 cut(s) 728
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 4 cut(s) 295, 337, 928, 949
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 441, 894
BsrFI RCCGGY 1 cut(s) 779
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 692, 950
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 3 cut(s) 30, 484, 728
BssMI GATC 5 cut(s) 358, 452, 516, 642, 901
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 2 cut(s) 30, 728
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 4 cut(s) 326, 526, 659, 672
Bst6I CTCTTC 2 cut(s) 219, 856
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 296, 1062
BstDEI CTNAG 5 cut(s) 282, 345, 876, 936, 957
BstDSI CCRYGG 1 cut(s) 728
BstF5I GGATG 4 cut(s) 637, 655, 809, 838
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 5 cut(s) 361, 455, 519, 645, 904
BstMAI GTCTC 4 cut(s) 6, 45, 958, 1010
BstMBI GATC 5 cut(s) 358, 452, 516, 642, 901
BstMWI GCNNNNNNNGC 2 cut(s) 392, 425
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 3 cut(s) 298, 683, 1003
BstSCI CCNGG 2 cut(s) 67, 484
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 872
BstV1I GCAGC 2 cut(s) 393, 998
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 667
BtgI CCRYGG 1 cut(s) 728
BtsCI GGATG 4 cut(s) 637, 655, 809, 838
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 589, 668
Cac8I GCNNGC 2 cut(s) 296, 1062
CaiI CAGNNNCTG 1 cut(s) 956
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 665
CseI GACGC 1 cut(s) 746
Csp6I GTAC 6 cut(s) 91, 339, 437, 601, 673, 979
CspCI CAANNNNNGTGG 2 cut(s) 752, 787
CviAII CATG 8 cut(s) 295, 530, 680, 729, 751, 823, 1000, 1067
CviQI GTAC 6 cut(s) 91, 339, 437, 601, 673, 979
DdeI CTNAG 5 cut(s) 282, 345, 876, 936, 957
DpnI GATC 5 cut(s) 360, 454, 518, 644, 903
DpnII GATC 5 cut(s) 358, 452, 516, 642, 901
Eam1104I CTCTTC 2 cut(s) 219, 856
EarI CTCTTC 2 cut(s) 219, 856
Eco130I CCWWGG 2 cut(s) 30, 728
Eco31I GGTCTC 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 55, 408
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 30, 728
EcoT22I ATGCAT 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 30, 728
FaeI CATG 8 cut(s) 298, 533, 683, 732, 754, 826, 1003, 1070
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 425
FatI CATG 8 cut(s) 294, 529, 679, 728, 750, 822, 999, 1066
FbaI TGATCA 1 cut(s) 901
Fnu4HI GCNGC 2 cut(s) 382, 987
FokI GGATG 4 cut(s) 644, 662, 796, 845
Fsp4HI GCNGC 2 cut(s) 382, 987
FspBI CTAG 3 cut(s) 108, 390, 450
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 382, 987
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 1 cut(s) 667
HapII CCGG 2 cut(s) 68, 780
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 386
Hin1II CATG 8 cut(s) 298, 533, 683, 732, 754, 826, 1003, 1070
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 840, 861
HpaII CCGG 2 cut(s) 68, 780
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 11, 285, 958
Hpy188III TCNNGA 8 cut(s) 344, 410, 450, 554, 623, 912, 1067, 1078
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 4 cut(s) 29, 181, 714, 727
HpyCH4III ACNGT 4 cut(s) 326, 526, 659, 672
HpyCH4V TGCA 6 cut(s) 298, 446, 594, 932, 986, 1060
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 425
HpyF3I CTNAG 5 cut(s) 282, 345, 876, 936, 957
Hsp92II CATG 8 cut(s) 298, 533, 683, 732, 754, 826, 1003, 1070
HspAI GCGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 901
Kzo9I GATC 5 cut(s) 358, 452, 516, 642, 901
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 2 cut(s) 393, 998
LweI GCATC 2 cut(s) 226, 455
MaeI CTAG 3 cut(s) 108, 390, 450
MaeIII GTNAC 2 cut(s) 71, 326
MalI GATC 5 cut(s) 360, 454, 518, 644, 903
MboI GATC 5 cut(s) 358, 452, 516, 642, 901
MboII GAAGA 8 cut(s) 56, 72, 236, 545, 578, 676, 739, 843
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 872
MluCI AATT 4 cut(s) 318, 331, 369, 1093
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 9 cut(s) 129, 142, 166, 208, 282, 811, 823, 952, 1063
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 1091
MslI CAYNNNNRTG 1 cut(s) 534
MspI CCGG 2 cut(s) 68, 780
MspR9I CCNGG 2 cut(s) 69, 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 392, 425
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 728
NdeII GATC 5 cut(s) 358, 452, 516, 642, 901
NlaIII CATG 8 cut(s) 298, 533, 683, 732, 754, 826, 1003, 1070
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 71, 326
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 3 cut(s) 298, 683, 1003
PaeI GCATGC 1 cut(s) 298
PagI TCATGA 1 cut(s) 1066
PkrI GCNGC 2 cut(s) 383, 988
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 6 cut(s) 92, 340, 438, 602, 674, 980
RsaNI GTAC 6 cut(s) 91, 339, 437, 601, 673, 979
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 1 cut(s) 1091
SatI GCNGC 2 cut(s) 382, 987
Sau3AI GATC 5 cut(s) 358, 452, 516, 642, 901
Sau96I GGNCC 1 cut(s) 665
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 69, 486
SduI GDGCHC 1 cut(s) 872
SfaNI GCATC 2 cut(s) 226, 455
SfcI CTRYAG 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 534
SpeI ACTAGT 1 cut(s) 389
SphI GCATGC 1 cut(s) 298
Sse9I AATT 4 cut(s) 318, 331, 369, 1093
SspMI CTAG 3 cut(s) 108, 390, 450
StyD4I CCNGG 2 cut(s) 67, 484
StyI CCWWGG 2 cut(s) 30, 728
TaaI ACNGT 4 cut(s) 326, 526, 659, 672
TaqI TCGA 3 cut(s) 512, 624, 796
TasI AATT 4 cut(s) 318, 331, 369, 1093
TatI WGTACW 4 cut(s) 90, 436, 672, 978
Tru1I TTAA 1 cut(s) 1091
Tru9I TTAA 1 cut(s) 1091
TscAI CASTG 2 cut(s) 596, 675
TseFI GTSAC 2 cut(s) 71, 326
TseI GCWGC 2 cut(s) 381, 986
Tsp45I GTSAC 2 cut(s) 71, 326
TspDTI ATGAA 5 cut(s) 57, 480, 546, 739, 1059
TspRI CASTG 2 cut(s) 596, 675
XapI RAATTY 1 cut(s) 318
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 3 cut(s) 298, 683, 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 3 cut(s) 108, 390, 450
ZrmI AGTACT 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.