Rmu_sc0000611.1_g000020

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000611.1
OG0000323
Physical Location & Seq
Forward (+)
74872 .. 75254
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000611.1_g000020.1.cds

Sequence Viewer

Length: 279 bp
atgatggaggatgtcaaagctttctactcttcacttgaagcttctggcaaacctaaacgacacactcatgacatttctgattctcggggtgattatgctgattggcttgcagcgcagtgtgggtgtccagtcttcgaagaatggagaaaacaaatgatgttaacaatagcaaagaattatttagtccggccgaaaacatatcaggatgagtgggatgataaccatttagtactacaagcttataaggacttcaagaaattcaccacatatggagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

92

Amino Acids

10.85

Weight (kDa)

6.26

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 2 cut(s) 38, 253
AluBI AGCT 3 cut(s) 20, 41, 239
AluI AGCT 3 cut(s) 20, 41, 239
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 101, 253
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 122
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 128
BseGI GGATG 3 cut(s) 16, 211, 220
BseNI ACTGG 1 cut(s) 128
BseX3I CGGCCG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 187
BsnI GGCC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 135
BspANI GGCC 1 cut(s) 190
BspHI TCATGA 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 108
BstF5I GGATG 3 cut(s) 16, 211, 220
BstHHI GCGC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 16, 211, 220
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 68
CviJI RGCY 5 cut(s) 20, 41, 106, 190, 239
CviKI_1 RGCY 5 cut(s) 20, 41, 106, 190, 239
CviQI GTAC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 188
EagI CGGCCG 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 84
FaeI CATG 1 cut(s) 71
FaiI YATR 6 cut(s) 69, 96, 199, 243, 268, 270
FatI CATG 1 cut(s) 67
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 23, 218, 227
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 3 cut(s) 18, 39, 237
HinfI GANTC 1 cut(s) 80
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 101, 253
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 68, 203, 253
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 113
KspAI GTTAAC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 30, 141, 188, 200
Lsp1109I GCAGC 1 cut(s) 122
MboII GAAGA 3 cut(s) 21, 124, 149
MluCI AATT 2 cut(s) 175, 257
MseI TTAA 2 cut(s) 161, 277
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 268
NlaIII CATG 1 cut(s) 71
NspV TTCGAA 1 cut(s) 135
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 243
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 161, 277
SatI GCNGC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 231
SetI ASST 4 cut(s) 22, 43, 55, 241
SfuI TTCGAA 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 2 cut(s) 175, 257
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 175, 257
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 161, 277
Tru9I TTAA 2 cut(s) 161, 277
TscAI CASTG 1 cut(s) 122
TseI GCWGC 1 cut(s) 110
TspRI CASTG 1 cut(s) 122
XapI RAATTY 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.