Rmu_sc0042472.1_g000001

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042472.1
OG0000323
Physical Location & Seq
Forward (+)
498 .. 1746
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042472.1_g000001.1.cds

Sequence Viewer

Length: 900 bp
atgcaactattatctcggcacgtagcggtgatcggcgctggcgcctccggcctggtggcggcacgtgagctccggcgggaaggtcacactgttgtcgtgttcgagcgaggagaccaaatcggtggcacgtgggtgtacactccagaagtggagtccgacccaattggtctccacccaaacagaaacatagtccactcgagcatgtaccagtctctcaggaccaatctcccaagagaggtcatggggttccgggactacccttttgtggccaaggaaggagatgaagagagagacccgagaaggtttccgggtcacagagaggtgttgcagtacttgaatgactacgctaccgagtttgggatttacgaggttgtgaggttccagtgtgaggtggtgtttgtgggtttggtggagggtggaaagtggaaggtgaagtccaagagcaagagaggtgaggttttggaagaggtttatgatgctgtggtggtctgtaatggacatcatactgagcctcgcgtagctcagattccaggcatcaatgcatggaaggggaagcaaattcacagccacaattaccgtaatcctgagccattcagagatcaggttgtaattttgataggcagcggcacaagtgctgttgatatgtctcgggagatagctggagttgctaaagaagtccacattgcatctagagctgttgctgatgaaaccattgaaaagcaccctggctatgataacttgtggcttcactcaatgatcaaaagtgcccatgaagatgggagcgttgttttccaagatgggagtgttgtccatgcagacatcattcttcattgcaccgggtatacttgcttagcctttttacagtatttcatgctactgggtagtgttcccaattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

299

Amino Acids

33.46

Weight (kDa)

6.1

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 842
AccII CGCG 1 cut(s) 516
AciI CCGC 4 cut(s) 26, 59, 76, 624
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 558
AcvI CACGTG 2 cut(s) 65, 129
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 137, 206, 332
AfiI CCNNNNNNNGG 5 cut(s) 58, 235, 265, 357, 388
AgsI TTSAA 2 cut(s) 337, 716
AjnI CCWGG 3 cut(s) 51, 529, 724
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 70, 521, 659, 695
AluI AGCT 4 cut(s) 70, 521, 659, 695
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 5 cut(s) 105, 173, 216, 285, 651
Ama87I CYCGRG 3 cut(s) 196, 295, 648
AoxI GGCC 2 cut(s) 49, 267
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 558
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 2 cut(s) 38, 44
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 3 cut(s) 251, 309, 838
AsuHPI GGTGA 3 cut(s) 40, 442, 464
AvaI CYCGRG 3 cut(s) 196, 295, 648
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 72
BbrPI CACGTG 2 cut(s) 65, 129
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 633
BccI CCATC 2 cut(s) 770, 791
BciT130I CCWGG 3 cut(s) 53, 531, 726
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 3 cut(s) 251, 309, 838
BcoDI GTCTC 5 cut(s) 105, 173, 216, 285, 651
BfaI CTAG 1 cut(s) 690
BfoI RGCGCY 2 cut(s) 39, 45
BisI GCNGC 3 cut(s) 60, 622, 625
BlpI GCTNAGC 1 cut(s) 850
BlsI GCNGC 3 cut(s) 61, 623, 626
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 6 cut(s) 53, 251, 309, 531, 726, 838
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 3 cut(s) 196, 295, 648
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 3 cut(s) 43, 248, 380
BmrFI CCNGG 6 cut(s) 53, 251, 309, 531, 726, 838
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 3 cut(s) 466, 543, 695
BmuI ACTGGG 1 cut(s) 887
BpmI CTGGAG 2 cut(s) 126, 681
Bpu10I CCTNAGC 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 850
BpuMI CCSGG 3 cut(s) 251, 309, 838
BsaAI YACGTR 3 cut(s) 22, 65, 129
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 3 cut(s) 105, 173, 285
BsaJI CCNNGG 2 cut(s) 270, 724
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 235, 265, 357, 388
Bse1I ACTGG 3 cut(s) 208, 382, 882
Bse3DI GCAATG 2 cut(s) 681, 829
BseBI CCWGG 3 cut(s) 53, 531, 726
BseDI CCNNGG 2 cut(s) 270, 724
BseLI CCNNNNNNNGG 5 cut(s) 58, 235, 265, 357, 388
BseMI GCAATG 2 cut(s) 681, 829
BseMII CTCAG 4 cut(s) 229, 498, 536, 576
BseNI ACTGG 3 cut(s) 208, 382, 882
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 1 cut(s) 633
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 2 cut(s) 51, 269
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 3 cut(s) 196, 295, 648
BsiSI CCGG 5 cut(s) 48, 73, 250, 308, 837
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 5 cut(s) 58, 235, 265, 357, 388
BsmAI GTCTC 5 cut(s) 105, 173, 216, 285, 651
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 51, 269
Bso31I GGTCTC 3 cut(s) 105, 173, 285
BsoBI CYCGRG 3 cut(s) 196, 295, 648
Bsp1286I GDGCHC 2 cut(s) 72, 769
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 3 cut(s) 30, 598, 756
Bsp1720I GCTNAGC 1 cut(s) 850
BspACI CCGC 4 cut(s) 26, 59, 76, 624
BspANI GGCC 2 cut(s) 51, 269
BspCNI CTCAG 4 cut(s) 228, 499, 535, 577
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 43, 248, 380
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 3 cut(s) 105, 173, 285
BsrDI GCAATG 2 cut(s) 681, 829
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 3 cut(s) 208, 382, 882
BssECI CCNNGG 2 cut(s) 270, 724
BssMI GATC 3 cut(s) 30, 598, 756
BssNAI GTATAC 1 cut(s) 843
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 843
Bst2UI CCWGG 3 cut(s) 53, 531, 726
Bst4CI ACNGT 3 cut(s) 91, 578, 864
Bst6I CTCTTC 2 cut(s) 279, 459
BstACI GRCGYC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 3 cut(s) 22, 65, 129
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 5 cut(s) 215, 507, 522, 585, 850
BstFNI CGCG 1 cut(s) 516
BstH2I RGCGCY 2 cut(s) 39, 45
BstHHI GCGC 2 cut(s) 38, 44
BstKTI GATC 3 cut(s) 33, 601, 759
BstMAI GTCTC 5 cut(s) 105, 173, 216, 285, 651
BstMBI GATC 3 cut(s) 30, 598, 756
BstMWI GCNNNNNNNGC 3 cut(s) 48, 665, 692
BstNI CCWGG 3 cut(s) 53, 531, 726
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 6 cut(s) 51, 249, 307, 529, 724, 836
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 633
BstXI CCANNNNNNTGG 2 cut(s) 122, 776
BstZ17I GTATAC 1 cut(s) 843
BsuRI GGCC 2 cut(s) 51, 269
BtsIMutI CAGTG 2 cut(s) 87, 389
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 2 cut(s) 38, 44
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 136, 205, 331
CviAII CATG 6 cut(s) 202, 241, 543, 770, 812, 871
CviQI GTAC 3 cut(s) 136, 205, 331
DdeI CTNAG 5 cut(s) 215, 507, 522, 585, 850
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 32, 600, 758
DpnII GATC 3 cut(s) 30, 598, 756
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 279, 459
EarI CTCTTC 2 cut(s) 279, 459
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 3 cut(s) 105, 173, 285
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 70
Eco72I CACGTG 2 cut(s) 65, 129
Eco88I CYCGRG 3 cut(s) 196, 295, 648
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 51, 529, 724
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 6 cut(s) 205, 244, 546, 773, 815, 874
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 201, 240, 542, 769, 811, 870
FauI CCCGC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 3 cut(s) 60, 622, 625
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 60, 622, 625
FspBI CTAG 1 cut(s) 690
GlaI GCGC 2 cut(s) 37, 43
GluI GCNGC 3 cut(s) 60, 622, 625
GsuI CTGGAG 2 cut(s) 126, 681
HaeII RGCGCY 2 cut(s) 39, 45
HaeIII GGCC 2 cut(s) 51, 269
HapII CCGG 5 cut(s) 48, 73, 250, 308, 837
HhaI GCGC 2 cut(s) 38, 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 6 cut(s) 205, 244, 546, 773, 815, 874
Hin6I GCGC 2 cut(s) 36, 42
HinP1I GCGC 2 cut(s) 36, 42
HinfI GANTC 2 cut(s) 152, 526
HpaII CCGG 5 cut(s) 48, 73, 250, 308, 837
HphI GGTGA 3 cut(s) 40, 442, 464
Hpy166II GTNNAC 5 cut(s) 136, 138, 193, 679, 843
Hpy188I TCNGA 3 cut(s) 157, 525, 596
Hpy188III TCNNGA 5 cut(s) 143, 217, 584, 650, 690
Hpy8I GTNNAC 5 cut(s) 136, 138, 193, 679, 843
HpyAV CCTTC 5 cut(s) 74, 269, 294, 421, 541
HpyCH4III ACNGT 3 cut(s) 91, 578, 864
HpyCH4IV ACGT 3 cut(s) 21, 64, 128
HpyCH4V TGCA 6 cut(s) 4, 328, 542, 686, 815, 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 665, 692
HpyF3I CTNAG 5 cut(s) 215, 507, 522, 585, 850
HpySE526I ACGT 3 cut(s) 21, 64, 128
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 6 cut(s) 205, 244, 546, 773, 815, 874
HspAI GCGC 2 cut(s) 36, 42
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 3 cut(s) 30, 598, 756
LmnI GCTCC 2 cut(s) 75, 780
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 3 cut(s) 466, 543, 695
MaeI CTAG 1 cut(s) 690
MaeII ACGT 3 cut(s) 21, 64, 128
MaeIII GTNAC 2 cut(s) 83, 311
MalI GATC 3 cut(s) 32, 600, 758
MboI GATC 3 cut(s) 30, 598, 756
MboII GAAGA 4 cut(s) 296, 476, 785, 818
MfeI CAATTG 2 cut(s) 162, 892
MhlI GDGCHC 2 cut(s) 72, 769
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 162, 558, 571, 609, 892
MluNI TGGCCA 1 cut(s) 269
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 544
MscI TGGCCA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 131, 774
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 624
MspI CCGG 5 cut(s) 48, 73, 250, 308, 837
MspR9I CCNGG 6 cut(s) 53, 251, 309, 531, 726, 838
MunI CAATTG 2 cut(s) 162, 892
MvaI CCWGG 3 cut(s) 53, 531, 726
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 48, 665, 692
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 3 cut(s) 251, 309, 838
NdeII GATC 3 cut(s) 30, 598, 756
NlaIII CATG 6 cut(s) 205, 244, 546, 773, 815, 874
NlaIV GGNNCC 3 cut(s) 43, 248, 380
NmuCI GTSAC 2 cut(s) 83, 311
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 196
PfeI GAWTC 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 3 cut(s) 61, 623, 626
PleI GAGTC 1 cut(s) 160
PluTI GGCGCC 1 cut(s) 45
PmaCI CACGTG 2 cut(s) 65, 129
PmlI CACGTG 2 cut(s) 65, 129
PpsI GAGTC 1 cut(s) 160
Ppu21I YACGTR 3 cut(s) 22, 65, 129
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 51, 529, 724
PspCI CACGTG 2 cut(s) 65, 129
PspGI CCWGG 3 cut(s) 51, 529, 724
PspN4I GGNNCC 3 cut(s) 43, 248, 380
PspPI GGNCC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 196
RsaI GTAC 3 cut(s) 137, 206, 332
RsaNI GTAC 3 cut(s) 136, 205, 331
RseI CAYNNNNRTG 2 cut(s) 131, 774
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 60, 622, 625
Sau3AI GATC 3 cut(s) 30, 598, 756
Sau96I GGNCC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 6 cut(s) 53, 251, 309, 531, 726, 838
SduI GDGCHC 2 cut(s) 72, 769
SfaNI GCATC 3 cut(s) 466, 543, 695
SfoI GGCGCC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 196
SinI GGWCC 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 131, 774
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 5 cut(s) 162, 558, 571, 609, 892
SsiI CCGC 4 cut(s) 26, 59, 76, 624
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 690
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 6 cut(s) 51, 249, 307, 529, 724, 836
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 3 cut(s) 91, 578, 864
TaiI ACGT 3 cut(s) 24, 67, 131
TaqI TCGA 2 cut(s) 102, 197
TasI AATT 5 cut(s) 162, 558, 571, 609, 892
TatI WGTACW 2 cut(s) 135, 330
TauI GCSGC 2 cut(s) 62, 627
TfiI GAWTC 1 cut(s) 526
TscAI CASTG 2 cut(s) 94, 389
TseFI GTSAC 2 cut(s) 83, 311
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 2 cut(s) 83, 311
TspDTI ATGAA 5 cut(s) 297, 720, 786, 818, 859
TspRI CASTG 2 cut(s) 94, 389
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 558
XbaI TCTAGA 1 cut(s) 689
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 842
XspI CTAG 1 cut(s) 690
ZrmI AGTACT 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.