RLG00000029627

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000323
Physical Location & Seq
Forward (+)
41522513 .. 41523784
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029627

Sequence Viewer

Length: 375 bp
ATGGCAGACGCACCACCGCCAACACCCTTCCATCACAAGGCACCGGAAACTGAAGGTTTTCGATTACGGACCCTCCGATTTGCCGAAGCAGCTCCAGGACGGCCTCCTTCACAAGTCTTGCGGGACGCCGGTGTACATGGAGCAGGAGGTTCTGTACCGGGTCGGGTGCGACAGATCCAAAGGCTGACGCGTGGTCCTGCGGCGTCATCCTCTTTGTTCTCTTCGCCGAACAGTTGTCCTCAACTCCTGGTCTTTCTCTCCCCGTCGCCACATGGATCTACCACCATCGCTGTCGTCGTGCCATGGCAGTGGCGTAGGTTCATATTCACAGTAGTGGCGGCCATGGCTAATATTGAGCTCACTGGTGGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.23

Weight (kDa)

11.36

Isoelectric Point (pI)

73.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccII CGCG 1 cut(s) 190
AciI CCGC 4 cut(s) 17, 121, 200, 338
AclWI GGATC 2 cut(s) 169, 283
AcoI YGGCCR 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 126, 203
AfaI GTAC 2 cut(s) 135, 156
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 188
AhdI GACNNNNNGTC 1 cut(s) 192
AjnI CCWGG 2 cut(s) 94, 246
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 2 cut(s) 92, 358
AluI AGCT 2 cut(s) 92, 358
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 2 cut(s) 169, 283
AoxI GGCC 2 cut(s) 101, 339
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 69, 194
AsuC2I CCSGG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 69, 194
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 39, 293
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 96, 248
BcnI CCSGG 1 cut(s) 159
BisI GCNGC 3 cut(s) 90, 201, 339
BlsI GCNGC 3 cut(s) 91, 202, 340
Bme1390I CCNGG 3 cut(s) 96, 159, 248
Bme18I GGWCC 2 cut(s) 69, 194
BmeRI GACNNNNNGTC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 69, 194
BmiI GGNNCC 2 cut(s) 42, 71
BmrFI CCNGG 3 cut(s) 96, 159, 248
BpmI CTGGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 159
BsaHI GRCGYC 2 cut(s) 126, 203
BsaJI CCNNGG 2 cut(s) 302, 342
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 57, 87, 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 96, 248
BseDI CCNNGG 2 cut(s) 302, 342
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 103, 341
BshNI GGYRCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 3 cut(s) 44, 129, 158
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 103, 341
Bsp1286I GDGCHC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 174, 275
Bsp19I CCATGG 2 cut(s) 302, 342
BspACI CCGC 4 cut(s) 17, 121, 200, 338
BspANI GGCC 2 cut(s) 103, 341
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 42, 71
BspPI GGATC 2 cut(s) 169, 283
BspT107I GGYRCC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 302, 342
BssMI GATC 2 cut(s) 174, 275
BssNI GRCGYC 2 cut(s) 126, 203
BssT1I CCWWGG 2 cut(s) 302, 342
Bst2UI CCWGG 2 cut(s) 96, 248
Bst4CI ACNGT 2 cut(s) 233, 331
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 2 cut(s) 126, 203
BstAUI TGTACA 1 cut(s) 133
BstDSI CCRYGG 2 cut(s) 302, 342
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 2 cut(s) 177, 278
BstMBI GATC 2 cut(s) 174, 275
BstMWI GCNNNNNNNGC 2 cut(s) 89, 344
BstNI CCWGG 2 cut(s) 96, 248
BstSCI CCNGG 3 cut(s) 94, 157, 246
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 2 cut(s) 174, 275
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 2 cut(s) 174, 275
BsuRI GGCC 2 cut(s) 103, 341
BtgI CCRYGG 2 cut(s) 302, 342
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 314, 360
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 69, 194
CseI GACGC 4 cut(s) 17, 134, 192, 196
Csp6I GTAC 2 cut(s) 134, 155
CviAII CATG 4 cut(s) 137, 272, 303, 343
CviJI RGCY 6 cut(s) 92, 103, 184, 341, 347, 358
CviKI_1 RGCY 6 cut(s) 92, 103, 184, 341, 347, 358
CviQI GTAC 2 cut(s) 134, 155
DpnI GATC 2 cut(s) 176, 277
DpnII GATC 2 cut(s) 174, 275
DriI GACNNNNNGTC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 302, 342
Eco24I GRGCYC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 69, 194
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 94, 246
EcoT14I CCWWGG 2 cut(s) 302, 342
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 302, 342
FaeI CATG 4 cut(s) 140, 275, 306, 346
FaiI YATR 5 cut(s) 138, 273, 304, 323, 344
FaqI GGGAC 1 cut(s) 137
FatI CATG 4 cut(s) 136, 271, 302, 342
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 90, 201, 339
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 3 cut(s) 90, 201, 339
GluI GCNGC 3 cut(s) 90, 201, 339
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 103, 341
HapII CCGG 3 cut(s) 44, 129, 158
HgaI GACGC 4 cut(s) 17, 134, 192, 196
Hin1I GRCGYC 2 cut(s) 126, 203
Hin1II CATG 4 cut(s) 140, 275, 306, 346
HpaII CCGG 3 cut(s) 44, 129, 158
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 134
Hpy99I CGWCG 2 cut(s) 268, 299
HpyAV CCTTC 3 cut(s) 37, 47, 117
HpyCH4III ACNGT 2 cut(s) 233, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 344
Hsp92I GRCGYC 2 cut(s) 126, 203
Hsp92II CATG 4 cut(s) 140, 275, 306, 346
Kzo9I GATC 2 cut(s) 174, 275
LmnI GCTCC 2 cut(s) 97, 140
Lsp1109I GCAGC 1 cut(s) 101
MalI GATC 2 cut(s) 176, 277
MboI GATC 2 cut(s) 174, 275
MboII GAAGA 1 cut(s) 213
MflI RGATCY 2 cut(s) 174, 275
MhlI GDGCHC 1 cut(s) 360
MluI ACGCGT 1 cut(s) 188
MnlI CCTC 5 cut(s) 83, 114, 140, 220, 249
MroXI GAANNNNTTC 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 307, 332
MspI CCGG 3 cut(s) 44, 129, 158
MspR9I CCNGG 3 cut(s) 96, 159, 248
MvaI CCWGG 2 cut(s) 96, 248
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 89, 344
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 2 cut(s) 302, 342
NdeII GATC 2 cut(s) 174, 275
NlaIII CATG 4 cut(s) 140, 275, 306, 346
NlaIV GGNNCC 2 cut(s) 42, 71
OliI CACNNNNGTG 1 cut(s) 332
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 294
PdmI GAANNNNTTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 3 cut(s) 91, 202, 340
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 94, 246
PspGI CCWGG 2 cut(s) 94, 246
PspN4I GGNNCC 2 cut(s) 42, 71
PspPI GGNCC 2 cut(s) 69, 194
PsuI RGATCY 2 cut(s) 174, 275
RsaI GTAC 2 cut(s) 135, 156
RsaNI GTAC 2 cut(s) 134, 155
RseI CAYNNNNRTG 2 cut(s) 307, 332
SacI GAGCTC 1 cut(s) 360
SatI GCNGC 3 cut(s) 90, 201, 339
Sau3AI GATC 2 cut(s) 174, 275
Sau96I GGNCC 2 cut(s) 69, 194
ScrFI CCNGG 3 cut(s) 96, 159, 248
SduI GDGCHC 1 cut(s) 360
SetI ASST 5 cut(s) 58, 94, 151, 320, 360
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 69, 194
SmiMI CAYNNNNRTG 2 cut(s) 307, 332
SsiI CCGC 4 cut(s) 17, 121, 200, 338
SspI AATATT 1 cut(s) 352
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 94, 157, 246
StyI CCWWGG 2 cut(s) 302, 342
TaaI ACNGT 2 cut(s) 233, 331
TaqI TCGA 1 cut(s) 61
TatI WGTACW 1 cut(s) 133
TauI GCSGC 2 cut(s) 203, 341
TscAI CASTG 2 cut(s) 314, 367
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 314, 367
VpaK11BI GGWCC 2 cut(s) 69, 194
XmnI GAANNNNTTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.