Rh7AG198900

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000323
Physical Location & Seq
Reverse (-)
17986417 .. 17998473
12057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG198900.1

Sequence Viewer

Length: 219 bp
ATGGAAGGAAAGCAAATTCACAGCCATAATTATCGAACTTCTGAGCCATTTCGAGATCAGGTCTGCCTCAATCAGTTTCTGCATTCAGTAGGAACTTTAGATTGTGCTGTCCAGAGTTTCCAATGTGATCCGATTAAAAGTGTCCATGAAGATGGTAGTGTTGTTTTCGCAGATGGAAGTGTTGTGGTCGCCGACACCATTCTTCACTGCACAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

72

Amino Acids

7.91

Weight (kDa)

5.24

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 15
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 79
ApoI RAATTY 1 cut(s) 15
BccI CCATC 2 cut(s) 146, 167
BseMII CTCAG 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 55, 127
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 122
BssMI GATC 2 cut(s) 55, 127
BstDEI CTNAG 1 cut(s) 42
BstKTI GATC 2 cut(s) 58, 130
BstMBI GATC 2 cut(s) 55, 127
BstXI CCANNNNNNTGG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 79
CviAII CATG 1 cut(s) 146
CviJI RGCY 2 cut(s) 24, 46
CviKI_1 RGCY 2 cut(s) 24, 46
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 57, 129
DpnII GATC 2 cut(s) 55, 127
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 27, 147
FatI CATG 1 cut(s) 145
Hin1II CATG 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 43, 132
Hpy188III TCNNGA 2 cut(s) 53, 112
HpyCH4V TGCA 2 cut(s) 82, 210
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 55, 127
LpnPI CCDG 3 cut(s) 44, 125, 198
MalI GATC 2 cut(s) 57, 129
MboI GATC 2 cut(s) 55, 127
MboII GAAGA 2 cut(s) 161, 194
MluCI AATT 2 cut(s) 15, 28
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 82
NdeII GATC 2 cut(s) 55, 127
NlaIII CATG 1 cut(s) 149
PctI GAATGC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 2 cut(s) 55, 127
SetI ASST 1 cut(s) 63
SgeI CNNG 4 cut(s) 65, 71, 124, 158
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 2 cut(s) 15, 28
TaqI TCGA 2 cut(s) 34, 52
TasI AATT 2 cut(s) 15, 28
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 212
XapI RAATTY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.