Rh7AG199400

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000323
Physical Location & Seq
Reverse (-)
18026237 .. 18029547
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG199400.1

Sequence Viewer

Length: 636 bp
ATGGCTGATGTTCCCTCTGCTCATTCGGCTACAAATACAATGCATCCCTTATACCGCCACGTAGCAGTGATTGGAGCCGGTGCCAGCGGATTGGTGGCGGCACGTGCGCTCCGGCATGAAGATCACAGCGTAGTAGTGTTTGAGCGAGGTGACCAAATGGGTGCTACGTGGGTGTACACCACAGAAGTGGAGTCCGACCCAATCGGTCTCCACCCAAACAGAACCATAGTCCACTCGAGCATGTACCAGTCTCTCAGGACCAACCCTCCCAGAGAGATCATGGGGTTCCGGGACTACCCATCTGCGGCCAAGGAACAAGATGAAGAGAGAGACCCGAGAAGGTTTCCGGGTCACAGAGAGGTGTTGAAGTACTTGAATGACTTCGCCGGCGAGTTTAAGATTTGTGAGATGATTGTTTGTTTCCCCAGTTTTGAACTTCAAAGCAAGTGGATAGCAGGAGTTTTGTCAAACCAAATTGCGCTTCCATCCAAAGTGGAGATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACACATTCATGACATTTTTGATTATCGGGATGAATATGCTGATTGGCTTGCAGCACAATGTGGGTGTCTAGTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

5.78

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 19 - 138 8.6e-11 Flavin-binding monooxygenase-like
DAO PF01266 20 - 60 4.6e-07 FAD dependent oxidoreductase
HI0933_like PF03486 20 - 55 1e-05 HI0933-like protein Rossmann domain
NAD_binding_8 PF13450 23 - 62 4.6e-09 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 4 cut(s) 55, 87, 98, 305
AcoI YGGCCR 1 cut(s) 306
AcvI CACGTG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 176, 245, 371
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 5 cut(s) 367, 376, 434, 440, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 2 cut(s) 518, 539
AluI AGCT 2 cut(s) 518, 539
Alw26I GTCTC 3 cut(s) 212, 255, 324
Ama87I CYCGRG 2 cut(s) 235, 334
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 109, 481
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 2 cut(s) 290, 348
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 235, 334
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 80
BbrPI CACGTG 1 cut(s) 104
BbvI GCAGC 1 cut(s) 620
BccI CCATC 3 cut(s) 307, 493, 496
BcnI CCSGG 2 cut(s) 290, 348
BcoDI GTCTC 3 cut(s) 212, 255, 324
BfaI CTAG 1 cut(s) 626
BisI GCNGC 3 cut(s) 99, 306, 609
BlsI GCNGC 3 cut(s) 100, 307, 610
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 2 cut(s) 290, 348
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 2 cut(s) 235, 334
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 3 cut(s) 76, 82, 287
BmrFI CCNGG 2 cut(s) 290, 348
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 290, 348
BsaAI YACGTR 3 cut(s) 61, 104, 168
BsaI GGTCTC 2 cut(s) 212, 324
BsaJI CCNNGG 1 cut(s) 309
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 250, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 2 cut(s) 77, 386
Bse1I ACTGG 2 cut(s) 247, 426
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 43, 485, 514, 592
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 247, 426
BseXI GCAGC 1 cut(s) 620
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 80
BsiHKCI CYCGRG 2 cut(s) 235, 334
BsiSI CCGG 5 cut(s) 78, 112, 289, 347, 387
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 3 cut(s) 212, 255, 324
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 2 cut(s) 212, 324
BsoBI CYCGRG 2 cut(s) 235, 334
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 121, 276
BspACI CCGC 4 cut(s) 55, 87, 98, 305
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 76, 82, 287
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 2 cut(s) 212, 324
BsrFI RCCGGY 2 cut(s) 77, 386
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 247, 426
BssAI RCCGGY 2 cut(s) 77, 386
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 121, 276
BssT1I CCWWGG 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 318, 532
BstAUI TGTACA 1 cut(s) 174
BstBAI YACGTR 3 cut(s) 61, 104, 168
BstC8I GCNNGC 3 cut(s) 85, 388, 606
BstDEI CTNAG 1 cut(s) 254
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 4 cut(s) 43, 485, 514, 592
BstHHI GCGC 2 cut(s) 109, 481
BstKTI GATC 2 cut(s) 124, 279
BstMAI GTCTC 3 cut(s) 212, 255, 324
BstMBI GATC 2 cut(s) 121, 276
BstMWI GCNNNNNNNGC 2 cut(s) 26, 104
BstNSI RCATGY 1 cut(s) 244
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 288, 346
BstV1I GCAGC 1 cut(s) 620
BstXI CCANNNNNNTGG 2 cut(s) 91, 187
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 4 cut(s) 43, 485, 514, 592
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 3 cut(s) 85, 388, 606
CciI TCATGA 1 cut(s) 565
CfoI GCGC 2 cut(s) 109, 481
Cfr10I RCCGGY 2 cut(s) 77, 386
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 175, 244, 370
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CviAII CATG 4 cut(s) 116, 241, 280, 566
CviJI RGCY 7 cut(s) 5, 29, 77, 308, 518, 539, 604
CviKI_1 RGCY 7 cut(s) 5, 29, 77, 308, 518, 539, 604
CviQI GTAC 3 cut(s) 175, 244, 370
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 123, 278
DpnII GATC 2 cut(s) 121, 276
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 318, 532
EarI CTCTTC 2 cut(s) 318, 532
Eco130I CCWWGG 1 cut(s) 309
Eco31I GGTCTC 2 cut(s) 212, 324
Eco47I GGWCC 1 cut(s) 258
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 235, 334
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 119, 244, 283, 569
FaiI YATR 8 cut(s) 52, 117, 227, 242, 281, 567, 594, 634
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 115, 240, 279, 565
Fnu4HI GCNGC 3 cut(s) 99, 306, 609
FokI GGATG 4 cut(s) 30, 472, 521, 599
Fsp4HI GCNGC 3 cut(s) 99, 306, 609
FspBI CTAG 1 cut(s) 626
GlaI GCGC 2 cut(s) 108, 480
GluI GCNGC 3 cut(s) 99, 306, 609
HaeIII GGCC 1 cut(s) 308
HapII CCGG 5 cut(s) 78, 112, 289, 347, 387
HhaI GCGC 2 cut(s) 109, 481
Hin1II CATG 4 cut(s) 119, 244, 283, 569
Hin6I GCGC 2 cut(s) 107, 479
HinP1I GCGC 2 cut(s) 107, 479
HindIII AAGCTT 2 cut(s) 516, 537
HinfI GANTC 1 cut(s) 191
HpaII CCGG 5 cut(s) 78, 112, 289, 347, 387
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 175, 177, 232
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 256, 566, 584
Hpy8I GTNNAC 3 cut(s) 175, 177, 232
HpyAV CCTTC 1 cut(s) 333
HpyCH4IV ACGT 3 cut(s) 60, 103, 167
HpyCH4V TGCA 2 cut(s) 43, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 104
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 3 cut(s) 60, 103, 167
Hsp92II CATG 4 cut(s) 119, 244, 283, 569
HspAI GCGC 2 cut(s) 107, 479
KroI GCCGGC 1 cut(s) 386
KroNI GCCGGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 121, 276
LmnI GCTCC 2 cut(s) 74, 114
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 626
MaeII ACGT 3 cut(s) 60, 103, 167
MaeIII GTNAC 2 cut(s) 149, 350
MalI GATC 2 cut(s) 123, 278
MboI GATC 2 cut(s) 121, 276
MboII GAAGA 3 cut(s) 131, 335, 519
MluCI AATT 1 cut(s) 474
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 5 cut(s) 25, 140, 276, 352, 499
Mph1103I ATGCAT 1 cut(s) 45
MreI CGCCGGCG 1 cut(s) 386
MroNI GCCGGC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 185, 564
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 5 cut(s) 78, 112, 289, 347, 387
MspR9I CCNGG 2 cut(s) 290, 348
MwoI GCNNNNNNNGC 2 cut(s) 26, 104
NaeI GCCGGC 1 cut(s) 388
NciI CCSGG 2 cut(s) 290, 348
NdeII GATC 2 cut(s) 121, 276
NgoMIV GCCGGC 1 cut(s) 386
NlaIII CATG 4 cut(s) 119, 244, 283, 569
NlaIV GGNNCC 3 cut(s) 76, 82, 287
NmuCI GTSAC 2 cut(s) 149, 350
NsiI ATGCAT 1 cut(s) 45
NspI RCATGY 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 1 cut(s) 565
PdiI GCCGGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 3 cut(s) 100, 307, 610
PleI GAGTC 1 cut(s) 199
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 3 cut(s) 61, 104, 168
PspCI CACGTG 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 76, 82, 287
PspPI GGNCC 1 cut(s) 258
PspXI VCTCGAGB 1 cut(s) 235
RsaI GTAC 3 cut(s) 176, 245, 371
RsaNI GTAC 3 cut(s) 175, 244, 370
RseI CAYNNNNRTG 2 cut(s) 185, 564
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 3 cut(s) 99, 306, 609
Sau3AI GATC 2 cut(s) 121, 276
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 290, 348
SetI ASST 9 cut(s) 63, 106, 151, 170, 344, 363, 520, 541, 553
SfaNI GCATC 1 cut(s) 52
Sfr274I CTCGAG 1 cut(s) 235
SgrAI CRCCGGYG 1 cut(s) 386
SinI GGWCC 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 185, 564
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 1 cut(s) 474
SsiI CCGC 4 cut(s) 55, 87, 98, 305
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 288, 346
StyI CCWWGG 1 cut(s) 309
TaiI ACGT 3 cut(s) 63, 106, 170
TaqI TCGA 1 cut(s) 236
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 474
TatI WGTACW 2 cut(s) 174, 369
TauI GCSGC 2 cut(s) 101, 308
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 149, 350
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 2 cut(s) 149, 350
TspDTI ATGAA 4 cut(s) 132, 336, 554, 603
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 91, 277
XhoI CTCGAG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 626
ZrmI AGTACT 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.