Rmu_sc0042472.1_g000002

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042472.1
OG0000323
Physical Location & Seq
Forward (+)
4278 .. 4862
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042472.1_g000002.1.cds

Sequence Viewer

Length: 585 bp
atgcaaccaccgaccaccctcaacgtggcggtgatcggcgccggagcctccggcctggtggccgcacgtgagctccggcgggaaggtcacactgttgtcgtgttcgagcgaggagaccaaatcggtggcacgtgggtgtacactccagaagtggagtccgacccaattggtctccacccaaacagaaacatagtccactcgagcatgtaccagtctctcaggaccaatctcccaagagaggtcatggggttccgggactacccttttgtggccagagaaggagatgaagagagagacccgagaaggtttccgggtcacagagaggtgttgaagtacttgaatgagtacgctaccgagtttgggatttctgaggttgtgaggtttgagagtgaggtggtgtctgtgggtttgctggagggtggaaagtggaaggtgaagtccaagagcaagagagttgaggttttggaagaggtttatgatgctgtggtggtgtgtaatggacatcatactgagccacgtgtagctcagatttcaggtatcatttgtcattttcgtttttattttttctgtcagacattggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

194

Amino Acids

22.01

Weight (kDa)

6.0

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 3 cut(s) 29, 63, 79
AcoI YGGCCR 2 cut(s) 60, 270
AcvI CACGTG 3 cut(s) 68, 132, 518
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 4 cut(s) 140, 209, 335, 347
AfiI CCNNNNNNNGG 4 cut(s) 25, 238, 268, 360
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 2 cut(s) 331, 340
AjnI CCWGG 1 cut(s) 54
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 2 cut(s) 73, 524
AluI AGCT 2 cut(s) 73, 524
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 4 cut(s) 108, 176, 219, 288
Ama87I CYCGRG 2 cut(s) 199, 298
AoxI GGCC 3 cut(s) 52, 60, 270
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 2 cut(s) 254, 312
AsuHPI GGTGA 2 cut(s) 43, 445
AvaI CYCGRG 2 cut(s) 199, 298
AvaII GGWCC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 75
BbrPI CACGTG 3 cut(s) 68, 132, 518
Bbv12I GWGCWC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 56
BcnI CCSGG 2 cut(s) 254, 312
BcoDI GTCTC 4 cut(s) 108, 176, 219, 288
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 56, 254, 312
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 2 cut(s) 199, 298
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 40, 46, 251
BmrFI CCNGG 3 cut(s) 56, 254, 312
BmsI GCATC 1 cut(s) 469
BpmI CTGGAG 2 cut(s) 129, 434
BpuMI CCSGG 2 cut(s) 254, 312
BsaAI YACGTR 3 cut(s) 68, 132, 518
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 3 cut(s) 108, 176, 288
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 238, 268, 360
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 56
BseLI CCNNNNNNNGG 4 cut(s) 25, 238, 268, 360
BseMII CTCAG 4 cut(s) 232, 360, 501, 539
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 126
BshFI GGCC 3 cut(s) 54, 62, 272
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 199, 298
BsiSI CCGG 5 cut(s) 42, 51, 76, 253, 311
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 4 cut(s) 25, 238, 268, 360
BsmAI GTCTC 4 cut(s) 108, 176, 219, 288
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 3 cut(s) 54, 62, 272
Bso31I GGTCTC 3 cut(s) 108, 176, 288
BsoBI CYCGRG 2 cut(s) 199, 298
Bsp1286I GDGCHC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 3 cut(s) 29, 63, 79
BspANI GGCC 3 cut(s) 54, 62, 272
BspCNI CTCAG 4 cut(s) 231, 361, 502, 538
BspLI GGNNCC 3 cut(s) 40, 46, 251
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 3 cut(s) 108, 176, 288
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 282, 462
BstACI GRCGYC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 138
BstBAI YACGTR 3 cut(s) 68, 132, 518
BstDEI CTNAG 4 cut(s) 218, 369, 510, 525
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 4 cut(s) 108, 176, 219, 288
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 54, 252, 310
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 3 cut(s) 54, 62, 272
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 4 cut(s) 139, 208, 334, 346
CviAII CATG 2 cut(s) 205, 244
CviJI RGCY 7 cut(s) 47, 54, 62, 73, 272, 514, 524
CviKI_1 RGCY 7 cut(s) 47, 54, 62, 73, 272, 514, 524
CviQI GTAC 4 cut(s) 139, 208, 334, 346
DdeI CTNAG 4 cut(s) 218, 369, 510, 525
DinI GGCGCC 1 cut(s) 40
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 2 cut(s) 60, 270
Eam1104I CTCTTC 2 cut(s) 282, 462
EarI CTCTTC 2 cut(s) 282, 462
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 3 cut(s) 108, 176, 288
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 73
Eco72I CACGTG 3 cut(s) 68, 132, 518
Eco88I CYCGRG 2 cut(s) 199, 298
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 75
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
FaeI CATG 2 cut(s) 208, 247
FaiI YATR 5 cut(s) 191, 206, 245, 477, 507
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 204, 243
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 2 cut(s) 129, 434
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 54, 62, 272
HapII CCGG 5 cut(s) 42, 51, 76, 253, 311
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 208, 247
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 155
HpaII CCGG 5 cut(s) 42, 51, 76, 253, 311
HphI GGTGA 2 cut(s) 43, 445
Hpy166II GTNNAC 3 cut(s) 139, 141, 196
Hpy188I TCNGA 4 cut(s) 160, 370, 528, 573
Hpy188III TCNNGA 2 cut(s) 146, 220
Hpy8I GTNNAC 3 cut(s) 139, 141, 196
HpyAV CCTTC 4 cut(s) 77, 272, 297, 424
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 4 cut(s) 24, 67, 131, 517
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 4 cut(s) 218, 369, 510, 525
HpySE526I ACGT 4 cut(s) 24, 67, 131, 517
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 208, 247
HspAI GCGC 1 cut(s) 39
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 44, 78
LweI GCATC 1 cut(s) 469
MaeII ACGT 4 cut(s) 24, 67, 131, 517
MaeIII GTNAC 2 cut(s) 86, 314
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 299, 479
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 272
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 5 cut(s) 42, 51, 76, 253, 311
MspR9I CCNGG 3 cut(s) 56, 254, 312
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 56
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 2 cut(s) 254, 312
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 208, 247
NlaIV GGNNCC 3 cut(s) 40, 46, 251
NmuCI GTSAC 2 cut(s) 86, 314
NspI RCATGY 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 163
PluTI GGCGCC 1 cut(s) 42
PmaCI CACGTG 3 cut(s) 68, 132, 518
PmlI CACGTG 3 cut(s) 68, 132, 518
PpsI GAGTC 1 cut(s) 163
Ppu21I YACGTR 3 cut(s) 68, 132, 518
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 54
PspCI CACGTG 3 cut(s) 68, 132, 518
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 40, 46, 251
PspPI GGNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 199
RsaI GTAC 4 cut(s) 140, 209, 335, 347
RsaNI GTAC 4 cut(s) 139, 208, 334, 346
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 75
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 56, 254, 312
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 1 cut(s) 469
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 1 cut(s) 165
SsiI CCGC 3 cut(s) 29, 63, 79
SspDI GGCGCC 1 cut(s) 38
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 54, 252, 310
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 4 cut(s) 27, 70, 134, 520
TaqI TCGA 2 cut(s) 105, 200
TasI AATT 1 cut(s) 165
TatI WGTACW 2 cut(s) 138, 333
TauI GCSGC 1 cut(s) 65
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 86, 314
Tsp45I GTSAC 2 cut(s) 86, 314
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 199
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.