Rh7DG205900

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000323
Physical Location & Seq
Reverse (-)
19522957 .. 19535821
12865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG205900.1

Sequence Viewer

Length: 762 bp
ATGGAAGGAAAGCAAATTCACAGCCATAATTATCGGACTTCTGAGCCATTTCGAGATCAGGTCTGCCTCGATCAGTTTCTGCATTCAGTAGGAACTTTAGATTGTGCTGTCCAGAGTTTCCAATGTGATCCGATAAATAGTGGATACGATAACATGCGGCTTCACTCTATGATTAAAAGTGTCCATGAAGATGGTAGTGTTGTTTTCGCAGATGGAAGTGTTGTGGTCGCCGACACCATTCTTCACTGCACAGGATACAAGTATCATTTCCCTTTTCTTGAGACCAATGGAATTGTAACTGTGGATGGGGATGACAACCGTTGGGCCGCTGTTCAAGCATGTCTTCCCACCTGCCTTTGCACCTTCGCTTTCTTTTGTTGGGCTACCATGGAAGAGACCGTTCCTTTCCCCAATTTTGAACTTCAAAGCAAGTGGATAGCAGGAGTTTTGTCGAATCGAATTGCGCTCCCATCCAAAGGGAAGATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACACACTCATGACATTTCTGATTCTCGGGGTGATTATGCTGATTGGCTTGCAGCGCAGTGTAGGTGTCCAGTCTTCGAAGAATGGAGAAAACAAATGATGCTAACAATAGCAAAGAATTATTTAGTCCGGCCGAAAACATATCAGGATGAGTGGGATGATAACCATTTAGTACTACAAGCTTATAAGGACTTCAAGAAATTCACCACACATGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

253

Amino Acids

28.92

Weight (kDa)

5.85

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 52 - 170 1.5e-10 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 157, 327
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 2 cut(s) 15, 740
AfaI GTAC 1 cut(s) 714
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 335, 419, 425, 521, 736
AluBI AGCT 3 cut(s) 503, 524, 722
AluI AGCT 3 cut(s) 503, 524, 722
Alw26I GTCTC 2 cut(s) 275, 389
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 324, 671
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 2 cut(s) 15, 740
AspLEI GCGC 2 cut(s) 466, 598
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 584, 736
AsuII TTCGAA 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 567
BbsI GAAGAC 2 cut(s) 335, 607
BbvI GCAGC 1 cut(s) 605
BccI CCATC 5 cut(s) 185, 206, 299, 478, 481
BciVI GTATCC 2 cut(s) 137, 248
BcoDI GTCTC 2 cut(s) 275, 389
BfuAI ACCTGC 1 cut(s) 359
BfuI GTATCC 2 cut(s) 137, 248
BisI GCNGC 3 cut(s) 158, 327, 594
BlsI GCNGC 3 cut(s) 159, 328, 595
BmcAI AGTACT 1 cut(s) 714
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 335, 607
Bpu14I TTCGAA 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 2 cut(s) 275, 389
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 6 cut(s) 310, 316, 470, 499, 694, 703
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 611
BseX3I CGGCCG 1 cut(s) 671
BseXI GCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 674
BshFI GGCC 2 cut(s) 326, 673
BsiEI CGRYCG 1 cut(s) 674
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 1 cut(s) 670
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 275, 389
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 2 cut(s) 326, 673
Bso31I GGTCTC 2 cut(s) 275, 389
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 618
Bsp143I GATC 3 cut(s) 55, 70, 127
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 157, 327
BspANI GGCC 2 cut(s) 326, 673
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 618
BspTNI GGTCTC 2 cut(s) 275, 389
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 3 cut(s) 55, 70, 127
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 301, 320, 400
Bst6I CTCTTC 2 cut(s) 387, 517
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 6 cut(s) 310, 316, 470, 499, 694, 703
BstHHI GCGC 2 cut(s) 466, 598
BstKTI GATC 3 cut(s) 58, 73, 130
BstMAI GTCTC 2 cut(s) 275, 389
BstMBI GATC 3 cut(s) 55, 70, 127
BstMCI CGRYCG 1 cut(s) 674
BstMWI GCNNNNNNNGC 2 cut(s) 335, 595
BstNSI RCATGY 2 cut(s) 157, 342
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 2 cut(s) 335, 607
BstXI CCANNNNNNTGG 1 cut(s) 191
BstZI CGGCCG 1 cut(s) 671
BsuI GTATCC 2 cut(s) 137, 248
BsuRI GGCC 2 cut(s) 326, 673
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 6 cut(s) 310, 316, 470, 499, 694, 703
BtsI GCAGTG 2 cut(s) 244, 605
BtsIMutI CAGTG 2 cut(s) 244, 605
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 591
CaiI CAGNNNCTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 550
CfoI GCGC 2 cut(s) 466, 598
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 713
CspCI CAANNNNNGTGG 2 cut(s) 413, 448
CviAII CATG 6 cut(s) 154, 185, 339, 388, 551, 752
CviQI GTAC 1 cut(s) 713
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 57, 72, 129
DpnII GATC 3 cut(s) 55, 70, 127
EaeI YGGCCR 1 cut(s) 671
EagI CGGCCG 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 387, 517
EarI CTCTTC 2 cut(s) 387, 517
EclXI CGGCCG 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 387
Eco31I GGTCTC 2 cut(s) 275, 389
Eco52I CGGCCG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 6 cut(s) 157, 188, 342, 391, 554, 755
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 6 cut(s) 153, 184, 338, 387, 550, 751
Fnu4HI GCNGC 3 cut(s) 158, 327, 594
FokI GGATG 6 cut(s) 317, 323, 457, 506, 701, 710
Fsp4HI GCNGC 3 cut(s) 158, 327, 594
GlaI GCGC 2 cut(s) 465, 597
GluI GCNGC 3 cut(s) 158, 327, 594
HaeIII GGCC 2 cut(s) 326, 673
HapII CCGG 1 cut(s) 670
HhaI GCGC 2 cut(s) 466, 598
Hin1II CATG 6 cut(s) 157, 188, 342, 391, 554, 755
Hin6I GCGC 2 cut(s) 464, 596
HinP1I GCGC 2 cut(s) 464, 596
HindIII AAGCTT 3 cut(s) 501, 522, 720
HinfI GANTC 2 cut(s) 454, 563
HpaII CCGG 1 cut(s) 670
HphI GGTGA 2 cut(s) 584, 736
Hpy188I TCNGA 4 cut(s) 36, 43, 132, 562
Hpy188III TCNNGA 6 cut(s) 53, 112, 278, 551, 686, 736
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 3 cut(s) 301, 320, 400
HpyCH4V TGCA 4 cut(s) 82, 249, 360, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 595
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 6 cut(s) 157, 188, 342, 391, 554, 755
HspAI GCGC 2 cut(s) 464, 596
Kzo9I GATC 3 cut(s) 55, 70, 127
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 9 cut(s) 44, 125, 237, 364, 426, 513, 624, 671, 683
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 57, 72, 129
MboI GATC 3 cut(s) 55, 70, 127
MboII GAAGA 8 cut(s) 200, 233, 335, 404, 493, 504, 607, 632
MluCI AATT 7 cut(s) 15, 28, 291, 412, 459, 658, 740
MnlI CCTC 2 cut(s) 77, 484
MseI TTAA 2 cut(s) 174, 760
MslI CAYNNNNRTG 2 cut(s) 189, 549
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 335, 595
NcoI CCATGG 1 cut(s) 387
NdeII GATC 3 cut(s) 55, 70, 127
NlaIII CATG 6 cut(s) 157, 188, 342, 391, 554, 755
NspI RCATGY 2 cut(s) 157, 342
NspV TTCGAA 1 cut(s) 618
PagI TCATGA 1 cut(s) 550
PaqCI CACCTGC 1 cut(s) 359
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 454, 563
PkrI GCNGC 3 cut(s) 159, 328, 595
PsiI TTATAA 1 cut(s) 726
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 714
RsaNI GTAC 1 cut(s) 713
RseI CAYNNNNRTG 2 cut(s) 189, 549
SaqAI TTAA 2 cut(s) 174, 760
SatI GCNGC 3 cut(s) 158, 327, 594
Sau3AI GATC 3 cut(s) 55, 70, 127
Sau96I GGNCC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 714
SetI ASST 8 cut(s) 63, 353, 365, 505, 526, 538, 608, 724
SfaNI GCATC 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 618
SmiMI CAYNNNNRTG 2 cut(s) 189, 549
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 7 cut(s) 15, 28, 291, 412, 459, 658, 740
SsiI CCGC 2 cut(s) 157, 327
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 301, 320, 400
TaqI TCGA 5 cut(s) 52, 69, 452, 457, 618
TasI AATT 7 cut(s) 15, 28, 291, 412, 459, 658, 740
TatI WGTACW 1 cut(s) 712
TauI GCSGC 2 cut(s) 160, 329
TfiI GAWTC 2 cut(s) 454, 563
Tru1I TTAA 2 cut(s) 174, 760
Tru9I TTAA 2 cut(s) 174, 760
TscAI CASTG 2 cut(s) 251, 605
TseI GCWGC 1 cut(s) 593
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 2 cut(s) 251, 605
XapI RAATTY 2 cut(s) 15, 740
XceI RCATGY 2 cut(s) 157, 342
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.