Rh7BG200000

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000323
Physical Location & Seq
Reverse (-)
16486266 .. 16487084
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG200000.1

Sequence Viewer

Length: 597 bp
ATGGTAGCTAGCTCTGCTCATTCGGCTACAATGCAACCCTTATCCCACCACGTAGCAGTGATCGGGGCCGGTGCCAGCGGTTTGGTGGCTGCACGTGAGCTCCGGCCAGAAGGACACACTGTCGTCGTCTTCGAGCGAGGTGACCAAATCGGGGGTACGTGGGTGTACACTCCAGAAATGGAGTCTGACCCAATTGGTCTCCACCCAAACAGAAACATAGTCTACTCGAGCATGTACCAGTCTCTCAGGACCAACCTCCCCAGAGAGATCATGGGGTTCCGGGACTACCCATTTGCGGCCAAGGAAGAAGATGAAGAGAGAGACCCGAGAAGGTTTCCGGGTCACAGAGAGGTGTTGAAGTACTTGAATGACTTCGCCGGCGAGTTTGGGATTTGTGAGATGGTGAGGTTTGAGACTGAGGTGGTGTTCGTGGGTTTGGTGGAGGGTGGCAAGTGGATGGTCAAGTCCAAGAGCAAGAGAGGTGAGGATTTGGAAGAGATTTATGATGCTGTGGTTGTCTGTAATGGCCATTCTACTGAGCCCCGTGTGGCCCAAATTGAAGGTATGGATCAATGTCAGAGCTTTACTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

198

Amino Acids

22.16

Weight (kDa)

5.18

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 17 - 184 9.4e-22 Flavin-binding monooxygenase-like
DAO PF01266 17 - 53 2.7e-07 FAD dependent oxidoreductase
Pyr_redox_2 PF07992 17 - 192 2.1e-07 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2 PF00890 18 - 55 4e-06 FAD binding domain
FAD_oxidored PF12831 18 - 88 5.3e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 20 - 54 3.4e-10 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 26 - 91 1.8e-06 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 222
AciI CCGC 2 cut(s) 78, 296
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 3 cut(s) 104, 297, 526
AcvI CACGTG 1 cut(s) 95
AfaI GTAC 4 cut(s) 157, 167, 236, 362
AfiI CCNNNNNNNGG 2 cut(s) 151, 295
AgsI TTSAA 3 cut(s) 358, 367, 560
AhdI GACNNNNNGTC 1 cut(s) 119
AluBI AGCT 4 cut(s) 8, 12, 100, 582
AluI AGCT 4 cut(s) 8, 12, 100, 582
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 4 cut(s) 203, 246, 315, 407
AlwI GGATC 1 cut(s) 576
Ama87I CYCGRG 2 cut(s) 226, 325
AoxI GGCC 5 cut(s) 66, 104, 297, 526, 549
ApeKI GCWGC 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 371
AspS9I GGNCC 3 cut(s) 66, 249, 550
AsuC2I CCSGG 2 cut(s) 281, 339
AsuHPI GGTGA 3 cut(s) 152, 415, 494
AsuNHI GCTAGC 1 cut(s) 8
AvaI CYCGRG 2 cut(s) 226, 325
AvaII GGWCC 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 102, 543
BbrPI CACGTG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 394, 451
BcnI CCSGG 2 cut(s) 281, 339
BcoDI GTCTC 4 cut(s) 203, 246, 315, 407
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 90, 297
BlsI GCNGC 2 cut(s) 91, 298
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 281, 339
Bme18I GGWCC 1 cut(s) 249
BmeRI GACNNNNNGTC 1 cut(s) 119
BmeT110I CYCGRG 2 cut(s) 226, 325
BmgT120I GGNCC 3 cut(s) 66, 249, 550
BmiI GGNNCC 3 cut(s) 67, 73, 278
BmrFI CCNGG 2 cut(s) 281, 339
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 281, 339
BsaAI YACGTR 3 cut(s) 52, 95, 159
BsaI GGTCTC 2 cut(s) 203, 315
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 295
Bse118I RCCGGY 2 cut(s) 68, 377
Bse1I ACTGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 151, 295
BseMII CTCAG 3 cut(s) 259, 408, 528
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 75
BshFI GGCC 5 cut(s) 68, 106, 299, 528, 551
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 2 cut(s) 226, 325
BsiSI CCGG 5 cut(s) 69, 103, 280, 338, 378
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 151, 295
BsmAI GTCTC 4 cut(s) 203, 246, 315, 407
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 5 cut(s) 68, 106, 299, 528, 551
Bso31I GGTCTC 2 cut(s) 203, 315
BsoBI CYCGRG 2 cut(s) 226, 325
Bsp1286I GDGCHC 2 cut(s) 102, 543
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 60, 267, 568
BspACI CCGC 2 cut(s) 78, 296
BspANI GGCC 5 cut(s) 68, 106, 299, 528, 551
BspCNI CTCAG 3 cut(s) 258, 409, 529
BspLI GGNNCC 3 cut(s) 67, 73, 278
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 576
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 2 cut(s) 203, 315
BsrFI RCCGGY 2 cut(s) 68, 377
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 2 cut(s) 68, 377
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 60, 267, 568
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 309, 489
BstAUI TGTACA 1 cut(s) 165
BstBAI YACGTR 3 cut(s) 52, 95, 159
BstC8I GCNNGC 3 cut(s) 10, 76, 379
BstDEI CTNAG 3 cut(s) 245, 417, 537
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 3 cut(s) 63, 270, 571
BstMAI GTCTC 4 cut(s) 203, 246, 315, 407
BstMBI GATC 3 cut(s) 60, 267, 568
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNSI RCATGY 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 279, 337
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuRI GGCC 5 cut(s) 68, 106, 299, 528, 551
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 117
Cac8I GCNNGC 3 cut(s) 10, 76, 379
Cfr10I RCCGGY 2 cut(s) 68, 377
Cfr13I GGNCC 3 cut(s) 66, 249, 550
Csp6I GTAC 4 cut(s) 156, 166, 235, 361
CviAII CATG 2 cut(s) 232, 271
CviQI GTAC 4 cut(s) 156, 166, 235, 361
DdeI CTNAG 3 cut(s) 245, 417, 537
DpnI GATC 3 cut(s) 62, 269, 570
DpnII GATC 3 cut(s) 60, 267, 568
DriI GACNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 3 cut(s) 104, 297, 526
Eam1104I CTCTTC 2 cut(s) 309, 489
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 2 cut(s) 309, 489
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 102, 543
Eco31I GGTCTC 2 cut(s) 203, 315
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 100
Eco72I CACGTG 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 226, 325
Eco91I GGTNACC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 102, 543
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 2 cut(s) 235, 274
FaiI YATR 5 cut(s) 218, 233, 272, 504, 566
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 231, 270
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 90, 297
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 2 cut(s) 102, 543
Fsp4HI GCNGC 2 cut(s) 90, 297
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 90, 297
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 5 cut(s) 68, 106, 299, 528, 551
HapII CCGG 5 cut(s) 69, 103, 280, 338, 378
Hin1II CATG 2 cut(s) 235, 274
HinfI GANTC 1 cut(s) 182
HpaII CCGG 5 cut(s) 69, 103, 280, 338, 378
HphI GGTGA 3 cut(s) 152, 415, 494
Hpy166II GTNNAC 3 cut(s) 166, 168, 223
Hpy188I TCNGA 2 cut(s) 187, 579
Hpy188III TCNNGA 2 cut(s) 173, 247
Hpy8I GTNNAC 3 cut(s) 166, 168, 223
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 104, 324, 554
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 3 cut(s) 51, 94, 158
HpyCH4V TGCA 2 cut(s) 34, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 3 cut(s) 245, 417, 537
HpySE526I ACGT 3 cut(s) 51, 94, 158
Hsp92II CATG 2 cut(s) 235, 274
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 60, 267, 568
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 496
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 51, 94, 158
MaeIII GTNAC 2 cut(s) 140, 341
MalI GATC 3 cut(s) 62, 269, 570
MboI GATC 3 cut(s) 60, 267, 568
MboII GAAGA 5 cut(s) 121, 317, 320, 326, 506
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 102, 543
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 3 cut(s) 192, 555, 592
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 8 cut(s) 131, 266, 343, 399, 412, 436, 473, 478
Mox20I TGGCCA 1 cut(s) 528
MreI CGCCGGCG 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 528
MseI TTAA 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 5 cut(s) 69, 103, 280, 338, 378
MspR9I CCNGG 2 cut(s) 281, 339
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 2 cut(s) 281, 339
NdeII GATC 3 cut(s) 60, 267, 568
NgoMIV GCCGGC 1 cut(s) 377
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 235, 274
NlaIV GGNNCC 3 cut(s) 67, 73, 278
NmuCI GTSAC 2 cut(s) 140, 341
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 2 cut(s) 91, 298
PleI GAGTC 1 cut(s) 190
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 3 cut(s) 52, 95, 159
PshBI ATTAAT 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 102
PspCI CACGTG 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 67, 73, 278
PspPI GGNCC 3 cut(s) 66, 249, 550
PspXI VCTCGAGB 1 cut(s) 226
RsaI GTAC 4 cut(s) 157, 167, 236, 362
RsaNI GTAC 4 cut(s) 156, 166, 235, 361
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 90, 297
Sau3AI GATC 3 cut(s) 60, 267, 568
Sau96I GGNCC 3 cut(s) 66, 249, 550
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 281, 339
SduI GDGCHC 2 cut(s) 102, 543
SfaNI GCATC 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 226
SgrAI CRCCGGYG 1 cut(s) 377
SinI GGWCC 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 192, 555, 592
SsiI CCGC 2 cut(s) 78, 296
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 279, 337
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 3 cut(s) 54, 97, 161
TaqI TCGA 2 cut(s) 132, 227
TasI AATT 3 cut(s) 192, 555, 592
TatI WGTACW 2 cut(s) 165, 360
TauI GCSGC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 2 cut(s) 63, 124
TseFI GTSAC 2 cut(s) 140, 341
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 2 cut(s) 140, 341
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 2 cut(s) 63, 124
VpaK11BI GGWCC 1 cut(s) 249
VspI ATTAAT 1 cut(s) 591
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 268
XhoI CTCGAG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.