Rorug07G0071000

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000323
Physical Location & Seq
Forward (+)
5420609 .. 5424651
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0071000.1

Sequence Viewer

Length: 1206 bp
ATGTTGAGTACAAGATTACAGTTTGGAAATGTTAGTGGAGAGGACAGGTTTGACATTGCTGGGAAAGCAAGGAAGAGATACAATCAGCAGCAAAAGCAGGCCAGGAAAGCAAAGAATGATGCAAACCAGAGCCCCAAAGAGAGCAAAGTTGTGGTTTCTGAGATCAAAGAGACTCAAAATTCAATTGCAAAGCCTTGTTCTGATCCCACTTTAACGCCAAGGAGTAATCTTGACAGGTTTTTGGAGTCTACTACGCCTTCAGTTCCAGCCCAGTATTTCTCTAAGACGACAATGAGAACTTGTGATGCGGAGTGTCAGCCTTACTTCGCTTTGAATGATCTTTGGGAATCGTTTAGGGAATGGAGTGCTTATGGAGCAGGAGTACCATTAGTCCTTAACAAAAGTGATTCTGTTATTCAATATTATGTTCCTTATTTATCCGGTATCCAATTATATGGCGAATCTGCTGTGAAGTCAAGTGCAAAGCAAAGGCAAGTTGGTGAGGACAATGATGATGACGACATTTTGGATTCAAGTAGTGATGCAAGCAGTGACTATGAAATTGAAAACCACATGAAGACTACTAGGGAGCAGCAGCATATTCTTCACCAATTAAACAATGAAGTTTCTAGTAGAATGGACGGGTTGTCCATAGGTGATGAACACCCCATATTGCAAGAAGGCTTTTCTAGTGATGATGGAGAAGCTGGGACTTCTCAAGGCTTGCTTTTTGAGTATCTTGAGCGGGATGCTCCATATGGCCGTGAACCATTGGCTGACAAGATATCAGACCTTGCACGCAAGTACCCTAGGTTGAAAATATTGAGAAGTTGCGACTTACTGCGAGGCAGTTGGATGTCAGTAGCTTGGTATCCCATATATCGAATACCTATGGGTCCAACGTTGAAAGATTTGGATGCTTGCTTTCTGACATATCATTCTCTTTCAACACCCATGAAAGGTAGTGGAAGTGACCAAGCTCCAGTGATGGTGTATCCCAGTGTGATGGATGGTGTCCCAAAGATTTCGTTACGTATTTTTGGATTGGCTTCGTATAAGCTCAAAGGATCCTTGTGGGCACAAAATGGAATAGAGTGTCAACTGGCTGATTCCCTGATGCAAGCTGCGGACAACTGGCTTAGCCTGCTTCAGGTCAATCACCCTGACTTCCGGTTCTTCGCTTCACATGGCATGTACTGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

401

Amino Acids

45.08

Weight (kDa)

5.5

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 75 - 393 2.9e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1191
Acc36I ACCTGC 1 cut(s) 1191
AccBSI CCGCTC 1 cut(s) 745
AccI GTMKAC 1 cut(s) 248
AciI CCGC 3 cut(s) 308, 745, 1127
AclI AACGTT 1 cut(s) 902
AclWI GGATC 3 cut(s) 197, 1062, 1075
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 243, 1133
AfaI GTAC 4 cut(s) 10, 384, 806, 1196
AfiI CCNNNNNNNGG 2 cut(s) 959, 1150
AgsI TTSAA 8 cut(s) 183, 334, 419, 534, 566, 817, 907, 948
AhdI GACNNNNNGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 5 cut(s) 707, 866, 980, 1060, 1124
AluI AGCT 5 cut(s) 707, 866, 980, 1060, 1124
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 3 cut(s) 197, 1062, 1075
AoxI GGCC 2 cut(s) 99, 760
ApeKI GCWGC 4 cut(s) 88, 592, 595, 1124
ApoI RAATTY 1 cut(s) 178
AspA2I CCTAGG 1 cut(s) 809
AspS9I GGNCC 1 cut(s) 896
AsuHPI GGTGA 4 cut(s) 512, 599, 668, 1151
AvaII GGWCC 1 cut(s) 896
AvrII CCTAGG 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 1081
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BamHI GGATCC 1 cut(s) 1067
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 100, 604, 607, 1111
BccI CCATC 4 cut(s) 692, 982, 1000, 1004
BceAI ACGGC 1 cut(s) 747
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 3 cut(s) 455, 882, 1005
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 585, 630, 690, 810
BfmI CTRYAG 1 cut(s) 1198
BfuAI ACCTGC 1 cut(s) 1191
BfuI GTATCC 3 cut(s) 455, 882, 1005
BisI GCNGC 4 cut(s) 89, 593, 596, 1125
BlnI CCTAGG 1 cut(s) 809
BlpI GCTNAGC 1 cut(s) 1139
BlsI GCNGC 4 cut(s) 90, 594, 597, 1126
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 896
BmeRI GACNNNNNGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 2 cut(s) 897, 1069
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 265, 993
BmsI GCATC 6 cut(s) 109, 295, 532, 739, 907, 1107
BmuI ACTGGG 2 cut(s) 265, 993
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 1139
BpuEI CTTGAG 2 cut(s) 702, 761
BsaAI YACGTR 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 218, 809
BsaWI WCCGGW 2 cut(s) 440, 1170
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 959, 1150
Bse1I ACTGG 5 cut(s) 271, 983, 999, 1107, 1139
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 218, 809
BseGI GGATG 4 cut(s) 754, 861, 922, 1015
BseLI CCNNNNNNNGG 2 cut(s) 959, 1150
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 5 cut(s) 271, 983, 999, 1107, 1139
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 4 cut(s) 100, 604, 607, 1111
BseYI CCCAGC 2 cut(s) 59, 707
BshFI GGCC 2 cut(s) 101, 762
BsiSI CCGG 2 cut(s) 441, 1171
BslFI GGGAC 2 cut(s) 724, 1001
BslI CCNNNNNNNGG 2 cut(s) 959, 1150
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 724, 1001
BsnI GGCC 2 cut(s) 101, 762
Bsp1286I GDGCHC 2 cut(s) 134, 1081
Bsp143I GATC 4 cut(s) 162, 202, 337, 1067
Bsp1720I GCTNAGC 1 cut(s) 1139
BspACI CCGC 3 cut(s) 308, 745, 1127
BspANI GGCC 2 cut(s) 101, 762
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 897, 1069
BspMAI CTGCAG 1 cut(s) 1202
BspMI ACCTGC 1 cut(s) 1191
BspPI GGATC 3 cut(s) 197, 1062, 1075
BsrBI CCGCTC 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 5 cut(s) 271, 983, 999, 1107, 1139
BssECI CCNNGG 2 cut(s) 218, 809
BssMI GATC 4 cut(s) 162, 202, 337, 1067
BssT1I CCWWGG 2 cut(s) 218, 809
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 1197
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 7 cut(s) 99, 547, 725, 799, 922, 1122, 1145
BstDEI CTNAG 3 cut(s) 159, 282, 1139
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 4 cut(s) 754, 861, 922, 1015
BstKTI GATC 4 cut(s) 165, 205, 340, 1070
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 162, 202, 337, 1067
BstMWI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 374, 1144, 1197
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 1 cut(s) 1081
BstSNI TACGTA 1 cut(s) 1034
BstV1I GCAGC 4 cut(s) 100, 604, 607, 1111
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 1067
BstXI CCANNNNNNTGG 2 cut(s) 455, 1006
BstYI RGATCY 1 cut(s) 1067
BsuI GTATCC 3 cut(s) 455, 882, 1005
BsuRI GGCC 2 cut(s) 101, 762
BtsCI GGATG 4 cut(s) 754, 861, 922, 1015
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 3 cut(s) 556, 990, 1006
BveI ACCTGC 1 cut(s) 1191
Cac8I GCNNGC 7 cut(s) 99, 547, 725, 799, 922, 1122, 1145
Cfr13I GGNCC 1 cut(s) 896
Csp6I GTAC 4 cut(s) 9, 383, 805, 1195
CviAII CATG 4 cut(s) 574, 955, 1187, 1192
CviQI GTAC 4 cut(s) 9, 383, 805, 1195
DdeI CTNAG 3 cut(s) 159, 282, 1139
DpnI GATC 4 cut(s) 164, 204, 339, 1069
DpnII GATC 4 cut(s) 162, 202, 337, 1067
DriI GACNNNNNGTC 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 68
Eco105I TACGTA 1 cut(s) 1034
Eco130I CCWWGG 2 cut(s) 218, 809
Eco24I GRGCYC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 896
Eco57I CTGAAG 2 cut(s) 243, 1133
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 786
EcoT14I CCWWGG 2 cut(s) 218, 809
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 218, 809
FaeI CATG 4 cut(s) 577, 958, 1190, 1195
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FaqI GGGAC 2 cut(s) 724, 1001
FatI CATG 4 cut(s) 573, 954, 1186, 1191
FauI CCCGC 1 cut(s) 738
FauNDI CATATG 1 cut(s) 757
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 89, 593, 596, 1125
FokI GGATG 4 cut(s) 761, 868, 929, 1022
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 89, 593, 596, 1125
FspBI CTAG 4 cut(s) 585, 630, 690, 810
GluI GCNGC 4 cut(s) 89, 593, 596, 1125
GsaI CCCAGC 2 cut(s) 63, 711
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 2 cut(s) 101, 762
HapII CCGG 2 cut(s) 441, 1171
Hin1II CATG 4 cut(s) 577, 958, 1190, 1195
HincII GTYRAC 1 cut(s) 1100
HindII GTYRAC 1 cut(s) 1100
HinfI GANTC 7 cut(s) 172, 245, 347, 407, 461, 530, 1109
HpaII CCGG 2 cut(s) 441, 1171
HphI GGTGA 4 cut(s) 512, 599, 668, 1151
Hpy166II GTNNAC 3 cut(s) 249, 767, 1100
Hpy188I TCNGA 4 cut(s) 160, 202, 790, 930
Hpy188III TCNNGA 2 cut(s) 230, 740
Hpy8I GTNNAC 3 cut(s) 249, 767, 1100
HpyAV CCTTC 2 cut(s) 267, 674
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 2 cut(s) 902, 1033
HpyCH4V TGCA 8 cut(s) 122, 188, 482, 545, 676, 797, 1120, 1200
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 374, 1144, 1197
HpyF3I CTNAG 3 cut(s) 159, 282, 1139
HpySE526I ACGT 2 cut(s) 902, 1033
Hsp92II CATG 4 cut(s) 577, 958, 1190, 1195
Kzo9I GATC 4 cut(s) 162, 202, 337, 1067
LmnI GCTCC 4 cut(s) 374, 589, 757, 985
Lsp1109I GCAGC 4 cut(s) 100, 604, 607, 1111
LweI GCATC 6 cut(s) 109, 295, 532, 739, 907, 1107
MaeI CTAG 4 cut(s) 585, 630, 690, 810
MaeII ACGT 2 cut(s) 902, 1033
MaeIII GTNAC 3 cut(s) 551, 971, 1029
MalI GATC 4 cut(s) 164, 204, 339, 1069
MbiI CCGCTC 1 cut(s) 745
MboI GATC 4 cut(s) 162, 202, 337, 1067
MboII GAAGA 4 cut(s) 85, 589, 596, 1168
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 1067
MhlI GDGCHC 2 cut(s) 134, 1081
MluCI AATT 5 cut(s) 178, 183, 449, 561, 611
MlyI GAGTC 2 cut(s) 166, 254
MmeI TCCRAC 2 cut(s) 833, 923
MnlI CCTC 3 cut(s) 34, 496, 839
MseI TTAA 3 cut(s) 212, 396, 614
MspI CCGG 2 cut(s) 441, 1171
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 6 cut(s) 65, 94, 107, 374, 1144, 1197
NdeI CATATG 1 cut(s) 757
NdeII GATC 4 cut(s) 162, 202, 337, 1067
NlaIII CATG 4 cut(s) 577, 958, 1190, 1195
NlaIV GGNNCC 2 cut(s) 897, 1069
NmuCI GTSAC 2 cut(s) 551, 971
NspI RCATGY 1 cut(s) 1195
PaqCI CACCTGC 1 cut(s) 1191
PfeI GAWTC 5 cut(s) 347, 407, 461, 530, 1109
PkrI GCNGC 4 cut(s) 90, 594, 597, 1126
PleI GAGTC 2 cut(s) 166, 253
PpsI GAGTC 2 cut(s) 166, 253
Ppu21I YACGTR 1 cut(s) 1034
Psp1406I AACGTT 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 2 cut(s) 59, 707
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 897, 1069
PspPI GGNCC 1 cut(s) 896
PstI CTGCAG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 1067
RsaI GTAC 4 cut(s) 10, 384, 806, 1196
RsaNI GTAC 4 cut(s) 9, 383, 805, 1195
SaqAI TTAA 3 cut(s) 212, 396, 614
SatI GCNGC 4 cut(s) 89, 593, 596, 1125
Sau3AI GATC 4 cut(s) 162, 202, 337, 1067
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 2 cut(s) 166, 254
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 134, 1081
SfaNI GCATC 6 cut(s) 109, 295, 532, 739, 907, 1107
SfcI CTRYAG 1 cut(s) 1198
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 2 cut(s) 717, 740
SmoI CTYRAG 2 cut(s) 717, 740
SnaBI TACGTA 1 cut(s) 1034
Sse9I AATT 5 cut(s) 178, 183, 449, 561, 611
SsiI CCGC 3 cut(s) 308, 745, 1127
SspI AATATT 2 cut(s) 422, 822
SspMI CTAG 4 cut(s) 585, 630, 690, 810
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 2 cut(s) 218, 809
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 2 cut(s) 905, 1036
TaqI TCGA 1 cut(s) 883
TasI AATT 5 cut(s) 178, 183, 449, 561, 611
TatI WGTACW 2 cut(s) 8, 1194
TfiI GAWTC 5 cut(s) 347, 407, 461, 530, 1109
Tru1I TTAA 3 cut(s) 212, 396, 614
Tru9I TTAA 3 cut(s) 212, 396, 614
TscAI CASTG 3 cut(s) 556, 990, 1006
TseFI GTSAC 2 cut(s) 551, 971
TseI GCWGC 4 cut(s) 88, 592, 595, 1124
Tsp45I GTSAC 2 cut(s) 551, 971
TspDTI ATGAA 5 cut(s) 573, 590, 636, 675, 971
TspRI CASTG 3 cut(s) 556, 990, 1006
VpaK11BI GGWCC 1 cut(s) 896
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 1195
XmaJI CCTAGG 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 4 cut(s) 585, 630, 690, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.