MD06G1063000.v1.1

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000323
Physical Location & Seq
Forward (+)
10862405 .. 10864461
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1063000.v1.1.491

Sequence Viewer

Length: 810 bp
ATGGAAAAGGAAGCAACTTCACAGCCACAGTTGTCGTACCCCAGAGCCATTTCAAGATCAGGTCTGTGTCCCTTTCTGTATCCTGATGTAATTTTGATAGGGAGCACACCTAGTGCCATTGATATTTCACGGGACATAGCTGGAATCGCAAAAGAAGTTCACATTGCATCTAGATCTCTCCCGGATATAACCAATGAAAAGCTGCCCACCTACGATAATATGTGGCTCCACTCTATGAGCATTGTCCGTGCTGACATCATTCTTCACTGCACAGGGTACAAATATCATTTCCCTTTTCTTGAAATCAATGGCATTGTGACCATGGATGATAACCGCGTTGGACCACTGTACAAGCACATCTTCCCACCCTCTTTGGCTCCAGCACTTTCCTTCGTTGGGTTACCATGGAAGGCTGAGCCTTTCCCTATGTTTGAACTTCAAAGCAAGTGGATAGCAGGCGTTTTGTCTAATCGGATTGCACTTCCGTCACAACAGGAGATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCAGGCACCCCTAAGCATTACACTCACGACATTTCTCCTTATAAGTTTGGATATGAGGATTGGCTAGCAGCTCAGTGCGGGTGTCCAGTCTTTGAAGAATGGAGAAAGCAAATGTTCGTTGCAGCGATACAGAACCTGATTAAACGACAAGAGACCTACCGGAACGAGTGGGATGACCACCATTTAGTATTGCAAGCTCACGAGGACTTCAGAAAATACACCTTAAAGGGAATTGGGGTAATGGATAAGCGATATCGAATGCTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

270

Amino Acids

30.89

Weight (kDa)

6.36

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 84 - 173 1.1e-14 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 545
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 334, 618
AcuI CTGAAG 2 cut(s) 525, 733
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 3 cut(s) 38, 278, 350
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 6 cut(s) 54, 302, 434, 440, 536, 635
AluBI AGCT 6 cut(s) 140, 202, 518, 539, 611, 737
AluI AGCT 6 cut(s) 140, 202, 518, 539, 611, 737
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 686
AlwNI CAGNNNCTG 1 cut(s) 676
ApeKI GCWGC 3 cut(s) 202, 608, 662
AspS9I GGNCC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 604
AvaII GGWCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 545
BauI CACGAG 1 cut(s) 740
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 189, 620, 674
BccI CCATC 1 cut(s) 496
BciVI GTATCC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 3 cut(s) 111, 171, 605
BfuI GTATCC 1 cut(s) 90
BglII AGATCT 1 cut(s) 173
BisI GCNGC 3 cut(s) 203, 609, 663
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 3 cut(s) 204, 610, 664
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 3 cut(s) 227, 378, 547
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 176
BmtI GCTAGC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 552
Bpu1102I GCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 321, 404
BsaWI WCCGGW 1 cut(s) 699
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 321, 404
BseGI GGATG 3 cut(s) 331, 514, 718
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 405, 626
BseNI ACTGG 1 cut(s) 626
BseXI GCAGC 3 cut(s) 189, 620, 674
BsgI GTGCAG 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 182, 700
BslFI GGGAC 2 cut(s) 54, 146
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 2 cut(s) 54, 146
BsmI GAATGC 1 cut(s) 804
Bso31I GGTCTC 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 56, 173
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 2 cut(s) 321, 404
BspACI CCGC 2 cut(s) 334, 618
BspCNI CTCAG 2 cut(s) 406, 625
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 227, 378, 547
BspOI GCTAGC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 2 cut(s) 321, 404
BssMI GATC 2 cut(s) 56, 173
BssSI CACGAG 1 cut(s) 740
BssT1I CCWWGG 2 cut(s) 321, 404
Bst2BI CACGAG 1 cut(s) 740
Bst4CI ACNGT 2 cut(s) 30, 348
Bst6I CTCTTC 1 cut(s) 532
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 457, 606, 735
BstDEI CTNAG 3 cut(s) 414, 552, 612
BstDSI CCRYGG 2 cut(s) 321, 404
BstEII GGTNACC 1 cut(s) 399
BstF5I GGATG 3 cut(s) 331, 514, 718
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 2 cut(s) 59, 176
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 2 cut(s) 56, 173
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 189, 620, 674
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 90
BtgI CCRYGG 2 cut(s) 321, 404
BtsCI GGATG 3 cut(s) 331, 514, 718
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 3 cut(s) 265, 344, 620
Cac8I GCNNGC 3 cut(s) 457, 606, 735
CaiI CAGNNNCTG 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 37, 277, 349
CspCI CAANNNNNGTGG 4 cut(s) 354, 389, 428, 463
CviAII CATG 2 cut(s) 322, 405
CviQI GTAC 3 cut(s) 37, 277, 349
DdeI CTNAG 3 cut(s) 414, 552, 612
DpnI GATC 2 cut(s) 58, 175
DpnII GATC 2 cut(s) 56, 173
DraIII CACNNNGTG 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 321, 404
Eco31I GGTCTC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 794
Eco47I GGWCC 1 cut(s) 341
Eco57I CTGAAG 2 cut(s) 525, 733
Eco91I GGTNACC 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 399
EcoRV GATATC 1 cut(s) 794
EcoT14I CCWWGG 2 cut(s) 321, 404
ErhI CCWWGG 2 cut(s) 321, 404
FaeI CATG 2 cut(s) 325, 408
FaiI YATR 9 cut(s) 137, 188, 221, 236, 323, 406, 428, 582, 594
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 2 cut(s) 54, 146
FatI CATG 2 cut(s) 321, 404
FauI CCCGC 1 cut(s) 611
Fnu4HI GCNGC 3 cut(s) 203, 609, 663
FokI GGATG 3 cut(s) 338, 521, 725
Fsp4HI GCNGC 3 cut(s) 203, 609, 663
FspBI CTAG 3 cut(s) 111, 171, 605
GluI GCNGC 3 cut(s) 203, 609, 663
GsuI CTGGAG 1 cut(s) 363
HapII CCGG 2 cut(s) 182, 700
Hin1II CATG 2 cut(s) 325, 408
HindIII AAGCTT 2 cut(s) 516, 537
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 182, 700
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 474, 752
Hpy188III TCNNGA 7 cut(s) 54, 83, 171, 299, 566, 740, 807
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 400, 403
HpyCH4III ACNGT 2 cut(s) 30, 348
HpyCH4V TGCA 5 cut(s) 167, 270, 479, 662, 733
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 3 cut(s) 414, 552, 612
Hsp92II CATG 2 cut(s) 325, 408
Kzo9I GATC 2 cut(s) 56, 173
LmnI GCTCC 3 cut(s) 102, 231, 382
Lsp1109I GCAGC 3 cut(s) 189, 620, 674
LweI GCATC 1 cut(s) 176
MaeI CTAG 3 cut(s) 111, 171, 605
MaeIII GTNAC 3 cut(s) 316, 399, 486
MalI GATC 2 cut(s) 58, 175
MboI GATC 2 cut(s) 56, 173
MboII GAAGA 4 cut(s) 254, 352, 519, 647
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 90, 771
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 4 cut(s) 379, 499, 589, 736
MseI TTAA 2 cut(s) 681, 764
MspI CCGG 2 cut(s) 182, 700
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 804
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 2 cut(s) 321, 404
NdeII GATC 2 cut(s) 56, 173
NheI GCTAGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 325, 408
NlaIV GGNNCC 3 cut(s) 227, 378, 547
NmuCI GTSAC 2 cut(s) 316, 486
PctI GAATGC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 3 cut(s) 204, 610, 664
PsiI TTATAA 1 cut(s) 582
PspEI GGTNACC 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 227, 378, 547
PspPI GGNCC 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 3 cut(s) 38, 278, 350
RsaNI GTAC 3 cut(s) 37, 277, 349
SaqAI TTAA 2 cut(s) 681, 764
SatI GCNGC 3 cut(s) 203, 609, 663
Sau3AI GATC 2 cut(s) 56, 173
Sau96I GGNCC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 1 cut(s) 341
Sse9I AATT 2 cut(s) 90, 771
SsiI CCGC 2 cut(s) 334, 618
SspMI CTAG 3 cut(s) 111, 171, 605
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 2 cut(s) 321, 404
TaaI ACNGT 2 cut(s) 30, 348
TaqI TCGA 1 cut(s) 796
TasI AATT 2 cut(s) 90, 771
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 681, 764
Tru9I TTAA 2 cut(s) 681, 764
TscAI CASTG 3 cut(s) 272, 351, 620
TseFI GTSAC 2 cut(s) 316, 486
TseI GCWGC 3 cut(s) 202, 608, 662
Tsp45I GTSAC 2 cut(s) 316, 486
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 2 cut(s) 236, 474
TspRI CASTG 3 cut(s) 272, 351, 620
VpaK11BI GGWCC 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 170
XspI CTAG 3 cut(s) 111, 171, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.