Rh7AG199200

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000323
Physical Location & Seq
Reverse (-)
18006752 .. 18007097
346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG199200.1

Sequence Viewer

Length: 309 bp
ATGTCGAACGCGCTTTATATTGTATATACAAAGTGTGAAGCTCGTTATTCGTCATTTTCTAGTATAAAAAAAAAGACAAGCGATAATAAAATGTCAACTTGTCAAGTCTCTTTAGCATTTGTGCCAGCGATGGCGGATGCTAGCTCTGCTCATTTGACTGCAATGCGTCCCTTATCCCGCCACGTAGCAGTGATCGGCGCCGGTGCCAGCGGTTTGGTGGCGGCACGTGAGCTTCGGCGGGAAGGTCACAACGTCGTAGTGTTCGAGAAAGGAGACCAATTGGGTGTACACCCCAGAAGTGGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

102

Amino Acids

10.92

Weight (kDa)

9.75

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 61 - 95 1.3e-08 FAD dependent oxidoreductase
HI0933_like PF03486 61 - 95 9.5e-07 HI0933-like protein Rossmann domain
FAD_binding_3 PF01494 61 - 101 2.6e-06 FAD binding domain
Pyr_redox_2 PF07992 61 - 94 6.2e-06 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2 PF00890 62 - 97 7.9e-08 FAD binding domain
NAD_binding_8 PF13450 64 - 97 1.1e-10 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 197, 203
AccII CGCG 1 cut(s) 11
AciI CCGC 5 cut(s) 134, 178, 210, 221, 238
AcvI CACGTG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 299
AluBI AGCT 3 cut(s) 41, 144, 232
AluI AGCT 3 cut(s) 41, 144, 232
Alw26I GTCTC 2 cut(s) 112, 267
AspLEI GCGC 2 cut(s) 13, 200
AsuNHI GCTAGC 1 cut(s) 140
BanI GGYRCC 2 cut(s) 197, 203
BbrPI CACGTG 1 cut(s) 227
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 112, 267
BfaI CTAG 2 cut(s) 60, 141
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 199, 205
BmsI GCATC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 144
BsaAI YACGTR 2 cut(s) 184, 227
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 168
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 197, 203
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 112, 267
BsmFI GGGAC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 5 cut(s) 134, 178, 210, 221, 238
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 199, 205
BspOI GCTAGC 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 197, 203
BspTNI GGTCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 286
BstBAI YACGTR 2 cut(s) 184, 227
BstC8I GCNNGC 3 cut(s) 126, 142, 208
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 13, 200
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 2 cut(s) 112, 267
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstUI CGCG 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 126, 142, 208
CfoI GCGC 2 cut(s) 13, 200
Cfr10I RCCGGY 1 cut(s) 200
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 287
CviJI RGCY 3 cut(s) 41, 144, 232
CviKI_1 RGCY 3 cut(s) 41, 144, 232
CviQI GTAC 1 cut(s) 287
DinI GGCGCC 1 cut(s) 199
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 227
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaiI YATR 4 cut(s) 18, 25, 27, 65
FaqI GGGAC 1 cut(s) 153
FauI CCCGC 2 cut(s) 185, 231
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 60, 141
GlaI GCGC 2 cut(s) 12, 199
GluI GCNGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 155
HhaI GCGC 2 cut(s) 13, 200
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 2 cut(s) 11, 198
HinP1I GCGC 2 cut(s) 11, 198
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 3 cut(s) 96, 287, 289
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 3 cut(s) 96, 287, 289
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 3 cut(s) 183, 226, 252
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 3 cut(s) 183, 226, 252
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 2 cut(s) 11, 198
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 138, 214, 220
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 60, 141
MaeII ACGT 3 cut(s) 183, 226, 252
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MfeI CAATTG 1 cut(s) 278
MluCI AATT 1 cut(s) 278
Mly113I GGCGCC 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 278
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 146
NarI GGCGCC 1 cut(s) 198
NdeII GATC 1 cut(s) 192
NheI GCTAGC 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 199, 205
NmuCI GTSAC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PkrI GCNGC 1 cut(s) 223
PluTI GGCGCC 1 cut(s) 201
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
Ppu21I YACGTR 2 cut(s) 184, 227
PspCI CACGTG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 199, 205
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 192
SetI ASST 7 cut(s) 43, 146, 186, 229, 234, 247, 255
SfaNI GCATC 1 cut(s) 127
SfoI GGCGCC 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 200
Sse9I AATT 1 cut(s) 278
SsiI CCGC 5 cut(s) 134, 178, 210, 221, 238
SspDI GGCGCC 1 cut(s) 197
SspMI CTAG 2 cut(s) 60, 141
TaiI ACGT 3 cut(s) 186, 229, 255
TaqI TCGA 2 cut(s) 5, 264
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 224
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspRI CASTG 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 2 cut(s) 60, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.