Rh7DG205300

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000323
Physical Location & Seq
Reverse (-)
19440402 .. 19442982
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG205300.1

Sequence Viewer

Length: 960 bp
ATGGTAAGGCTTGAGAGTGAGGTGGCGTTCGTGGGTTTGGTGGAGGGTGGCAAGTGGATGGTTAAATCCAAGAGCAAGACAAAAATTCCAGGTATCACTACATGGAAAGGGAAGCAAATTCACAGCCACAACTATCGGACTCCTGAGCTGTTTCGAGATCAGGTTGTAATTTTAATAGGGAGCTCCAGTAGTGCTACTGATATCTCTCGGGACATCGCTGGAGTTGCCAAAGAGGTTCACATTTCATCTAGATCTGTTGCGTCCGAAACCAATGAGAAGAAGCCTTGCTTTAATACGACGCGGCTTAACGCTATGATTAATAGTGGCTATGATAACATGTGGCTTCACTCTAAGATTGAAAGTGTCCATGAAGATGGTAGTGTTGTTTTCACAGATAGGAGTGTTGTCGTTGCTGACACCATTCTTCACTGCACAAGGTACAAATATCATTTTCCTTTTCTCGAAACCAATGGCATTGTAACCGTTGATGAGGATGACAACCGTGTCGGGCCACTGTTCAAGCATGTCTTCCCACCTGCCTTGGCACCGTCGCTTTCTTTTGTCGGGGTACCATCGAAGACCCTTATTCCTTTCCCCAATTTTGAACTTCAAAGCAAGTGGATAGCAGGAGTTTTGTCTAATCGAATTGCGCTTCCATCTCAAGAGGAGATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACAAACCCATGACATTGCTGATTATCAAGGCGATTATGCTGATTGGCTTGCAGCGCAGTGTGGGAGCCCAGTCTTTGAAGAATGGAGAAAACAAATAATGTTCGCAGTAGCAAAGAATTATCTAGTCCGGCCGAAGACATATCACGATGAGTGGGATGATGACCATTTAGTGCTGCAAGCTTATAAGGACTTCTGGAAATTCACCACAGATGGATCGAGTTTAACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

319

Amino Acids

36.11

Weight (kDa)

6.27

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 13 - 85 9e-12 Flavin-binding monooxygenase-like
Pyr_redox_3 PF13738 28 - 165 4.5e-08 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 90 - 251 2.4e-15 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AarI CACCTGC 1 cut(s) 544
AasI GACNNNNNNGTC 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 544
Acc65I GGTACC 1 cut(s) 568
AccB1I GGYRCC 2 cut(s) 544, 568
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 949
AcoI YGGCCR 1 cut(s) 857
AcsI RAATTY 3 cut(s) 84, 117, 926
AfaI GTAC 2 cut(s) 440, 570
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 6 cut(s) 359, 520, 605, 611, 707, 806
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 5 cut(s) 148, 183, 689, 710, 908
AluI AGCT 5 cut(s) 148, 183, 689, 710, 908
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 2 cut(s) 509, 857
ApeKI GCWGC 2 cut(s) 779, 901
ApoI RAATTY 3 cut(s) 84, 117, 926
AseI ATTAAT 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 568
AspLEI GCGC 2 cut(s) 652, 784
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 922
AvaI CYCGRG 1 cut(s) 207
BanI GGYRCC 2 cut(s) 544, 568
BanII GRGCYC 2 cut(s) 185, 797
BbsI GAAGAC 3 cut(s) 520, 584, 869
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 791, 888
BccI CCATC 6 cut(s) 52, 368, 580, 664, 667, 932
BciT130I CCWGG 1 cut(s) 90
BfaI CTAG 2 cut(s) 249, 851
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 251
BisI GCNGC 3 cut(s) 302, 780, 902
BlsI GCNGC 3 cut(s) 303, 781, 903
Bme1390I CCNGG 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 3 cut(s) 546, 570, 794
BmrFI CCNGG 1 cut(s) 90
BmrI ACTGGG 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 3 cut(s) 520, 584, 869
BpmI CTGGAG 2 cut(s) 169, 240
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 32, 645
BsaJI CCNNGG 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse1I ACTGG 2 cut(s) 186, 797
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 4 cut(s) 63, 499, 685, 889
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 186, 797
BseRI GAGGAG 1 cut(s) 680
BseX3I CGGCCG 1 cut(s) 857
BseXI GCAGC 2 cut(s) 791, 888
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 860
BshFI GGCC 2 cut(s) 511, 859
BshNI GGYRCC 2 cut(s) 544, 568
BsiEI CGRYCG 1 cut(s) 860
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 856
BslFI GGGAC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 511, 859
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 185, 797
Bsp143I GATC 3 cut(s) 157, 251, 941
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 511, 859
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 546, 570, 794
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 949
BspT107I GGYRCC 2 cut(s) 544, 568
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 2 cut(s) 186, 797
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 3 cut(s) 157, 251, 941
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 4 cut(s) 484, 503, 516, 549
Bst6I CTCTTC 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 777, 906
BstDEI CTNAG 2 cut(s) 144, 351
BstF5I GGATG 4 cut(s) 63, 499, 685, 889
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 2 cut(s) 652, 784
BstKTI GATC 3 cut(s) 160, 254, 944
BstMBI GATC 3 cut(s) 157, 251, 941
BstMCI CGRYCG 1 cut(s) 860
BstMWI GCNNNNNNNGC 2 cut(s) 224, 781
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 2 cut(s) 340, 527
BstSCI CCNGG 1 cut(s) 88
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 791, 888
BstV2I GAAGAC 3 cut(s) 520, 584, 869
BstX2I RGATCY 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 857
BsuRI GGCC 2 cut(s) 511, 859
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 4 cut(s) 63, 499, 685, 889
BtsI GCAGTG 2 cut(s) 427, 791
BtsIMutI CAGTG 3 cut(s) 427, 512, 791
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 777, 906
CfoI GCGC 2 cut(s) 652, 784
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 2 cut(s) 249, 307
Csp6I GTAC 2 cut(s) 439, 569
CspCI CAANNNNNGTGG 4 cut(s) 522, 557, 599, 634
CviAII CATG 5 cut(s) 102, 337, 368, 524, 737
CviQI GTAC 2 cut(s) 439, 569
DdeI CTNAG 2 cut(s) 144, 351
DpnI GATC 3 cut(s) 159, 253, 943
DpnII GATC 3 cut(s) 157, 251, 941
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 857
EagI CGGCCG 1 cut(s) 857
Eam1104I CTCTTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 703
Ecl136II GAGCTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 2 cut(s) 185, 797
Eco32I GATATC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 2 cut(s) 185, 797
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 5 cut(s) 105, 340, 371, 527, 740
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 512, 544
FaqI GGGAC 1 cut(s) 224
FatI CATG 5 cut(s) 101, 336, 367, 523, 736
Fnu4HI GCNGC 3 cut(s) 302, 780, 902
FokI GGATG 4 cut(s) 70, 506, 692, 896
FriOI GRGCYC 2 cut(s) 185, 797
Fsp4HI GCNGC 3 cut(s) 302, 780, 902
FspBI CTAG 2 cut(s) 249, 851
GlaI GCGC 2 cut(s) 651, 783
GluI GCNGC 3 cut(s) 302, 780, 902
GsuI CTGGAG 2 cut(s) 169, 240
HaeIII GGCC 2 cut(s) 511, 859
HapII CCGG 1 cut(s) 856
HgaI GACGC 2 cut(s) 249, 307
HhaI GCGC 2 cut(s) 652, 784
Hin1II CATG 5 cut(s) 105, 340, 371, 527, 740
Hin6I GCGC 2 cut(s) 650, 782
HinP1I GCGC 2 cut(s) 650, 782
HindIII AAGCTT 3 cut(s) 687, 708, 906
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 856
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 138, 265
Hpy188III TCNNGA 8 cut(s) 143, 155, 209, 249, 461, 662, 872, 922
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 2 cut(s) 301, 553
HpyCH4III ACNGT 4 cut(s) 484, 503, 516, 549
HpyCH4V TGCA 3 cut(s) 432, 779, 904
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 781
HpyF3I CTNAG 2 cut(s) 144, 351
Hsp92II CATG 5 cut(s) 105, 340, 371, 527, 740
HspAI GCGC 2 cut(s) 650, 782
KpnI GGTACC 1 cut(s) 572
Kzo9I GATC 3 cut(s) 157, 251, 941
LmnI GCTCC 3 cut(s) 180, 188, 792
Lsp1109I GCAGC 2 cut(s) 791, 888
MaeI CTAG 2 cut(s) 249, 851
MaeIII GTNAC 1 cut(s) 478
MalI GATC 3 cut(s) 159, 253, 943
MboI GATC 3 cut(s) 157, 251, 941
MboII GAAGA 8 cut(s) 289, 383, 416, 520, 589, 690, 818, 874
MflI RGATCY 1 cut(s) 251
MhlI GDGCHC 2 cut(s) 185, 797
MluCI AATT 7 cut(s) 84, 117, 168, 598, 645, 844, 926
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 6 cut(s) 13, 37, 226, 484, 658, 670
MseI TTAA 6 cut(s) 63, 173, 291, 306, 318, 950
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 1 cut(s) 856
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 224, 781
NdeII GATC 3 cut(s) 157, 251, 941
NlaIII CATG 5 cut(s) 105, 340, 371, 527, 740
NlaIV GGNNCC 3 cut(s) 546, 570, 794
NspI RCATGY 2 cut(s) 340, 527
PaqCI CACCTGC 1 cut(s) 544
PciI ACATGT 1 cut(s) 336
PkrI GCNGC 3 cut(s) 303, 781, 903
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PscI ACATGT 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 912
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 3 cut(s) 546, 570, 794
PspPI GGNCC 1 cut(s) 509
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 2 cut(s) 440, 570
RsaNI GTAC 2 cut(s) 439, 569
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 6 cut(s) 63, 173, 291, 306, 318, 950
SatI GCNGC 3 cut(s) 302, 780, 902
Sau3AI GATC 3 cut(s) 157, 251, 941
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 2 cut(s) 185, 797
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 11, 660
SmoI CTYRAG 2 cut(s) 11, 660
Sse9I AATT 7 cut(s) 84, 117, 168, 598, 645, 844, 926
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 249, 851
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 4 cut(s) 484, 503, 516, 549
TaqI TCGA 5 cut(s) 154, 462, 575, 643, 944
TasI AATT 7 cut(s) 84, 117, 168, 598, 645, 844, 926
TauI GCSGC 1 cut(s) 304
Tru1I TTAA 6 cut(s) 63, 173, 291, 306, 318, 950
Tru9I TTAA 6 cut(s) 63, 173, 291, 306, 318, 950
TscAI CASTG 3 cut(s) 434, 519, 791
TseI GCWGC 2 cut(s) 779, 901
TspDTI ATGAA 2 cut(s) 234, 384
TspRI CASTG 3 cut(s) 434, 519, 791
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 3 cut(s) 84, 117, 926
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 2 cut(s) 340, 527
XspI CTAG 2 cut(s) 249, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.