RLG00000003586

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000323
Physical Location & Seq
Forward (+)
50317927 .. 50319656
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003586

Sequence Viewer

Length: 465 bp
ATGCATCCCTTATCCCGCCATGTAGCAGTGATCAGCGCTGGTGCCAGTGATTTGGTGGCTGCATGTGAGCTCCGGTGGGAAGGACACATTGTCGTCGTCTTCGAGCGAGGTGACCAAATCGGTGTCAATGAGCCATCAATTTCTGCTACTTATGGGCATGAAGTTGGGATTGCTCAGTCGAGGAAGTGTTCACTTCAGGATGATCCTTGTGTGTTTGGGCTTGAAGAGAAATATTTTGTCCCCATAGCTCCAGGACAGCCTCCTTCACAAGTCTTGCGGGACGCCGGTGTACATGGAGCTGGAGGTTCTGTACCGGGTCGGGTGCGACAGATCCAAAGGCTGACGCGTGGTCCTGCGGCGTCATCCTCTTCGTTCTCTTCACCGAACAGTTGTCCTCAACTCCTGGTCTTTCTCTCCCCGTCGCCACATGGATCTACCACCATCGCTGTCGTCGTGCCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

155

Amino Acids

16.23

Weight (kDa)

6.57

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 346
AciI CCGC 3 cut(s) 16, 277, 356
AclWI GGATC 3 cut(s) 197, 325, 439
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 2 cut(s) 282, 359
AfaI GTAC 2 cut(s) 291, 312
AfeI AGCGCT 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 1 cut(s) 224
AhdI GACNNNNNGTC 2 cut(s) 89, 348
AjnI CCWGG 2 cut(s) 250, 402
AluBI AGCT 3 cut(s) 70, 248, 299
AluI AGCT 3 cut(s) 70, 248, 299
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 3 cut(s) 197, 325, 439
Aor51HI AGCGCT 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 122, 372
AvaII GGWCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 142, 449
BciT130I CCWGG 2 cut(s) 252, 404
BclI TGATCA 1 cut(s) 30
BcnI CCSGG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 2 cut(s) 60, 357
BlsI GCNGC 2 cut(s) 61, 358
Bme1390I CCNGG 3 cut(s) 252, 315, 404
Bme18I GGWCC 1 cut(s) 350
BmeRI GACNNNNNGTC 2 cut(s) 89, 348
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 252, 315, 404
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 2 cut(s) 234, 321
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 282, 359
BsaJI CCNNGG 1 cut(s) 458
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 252, 404
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 3 cut(s) 4, 205, 362
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 3 cut(s) 73, 285, 314
BslFI GGGAC 2 cut(s) 224, 293
BsmFI GGGAC 2 cut(s) 224, 293
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 4 cut(s) 30, 202, 330, 431
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 3 cut(s) 16, 277, 356
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 3 cut(s) 197, 325, 439
BspT107I GGYRCC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 4 cut(s) 30, 202, 330, 431
BssNI GRCGYC 2 cut(s) 282, 359
BssT1I CCWWGG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 252, 404
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 3 cut(s) 219, 373, 382
BstACI GRCGYC 2 cut(s) 282, 359
BstAUI TGTACA 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 458
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 3 cut(s) 4, 205, 362
BstFNI CGCG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 33, 205, 333, 434
BstMBI GATC 4 cut(s) 30, 202, 330, 431
BstNI CCWGG 2 cut(s) 252, 404
BstNSI RCATGY 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 250, 313, 402
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 330, 431
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 2 cut(s) 330, 431
BtgI CCRYGG 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 427
BtsCI GGATG 3 cut(s) 4, 205, 362
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 52
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 3 cut(s) 290, 348, 352
Csp6I GTAC 2 cut(s) 290, 311
CviAII CATG 6 cut(s) 20, 63, 158, 293, 428, 459
CviJI RGCY 8 cut(s) 59, 70, 133, 220, 248, 259, 299, 340
CviKI_1 RGCY 8 cut(s) 59, 70, 133, 220, 248, 259, 299, 340
CviQI GTAC 2 cut(s) 290, 311
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 32, 204, 332, 433
DpnII GATC 4 cut(s) 30, 202, 330, 431
DriI GACNNNNNGTC 2 cut(s) 89, 348
Eam1104I CTCTTC 3 cut(s) 219, 373, 382
Eam1105I GACNNNNNGTC 2 cut(s) 89, 348
EarI CTCTTC 3 cut(s) 219, 373, 382
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 350
Eco47III AGCGCT 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 250, 402
EcoT14I CCWWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 6 cut(s) 23, 66, 161, 296, 431, 462
FaiI YATR 8 cut(s) 21, 64, 153, 159, 245, 294, 429, 460
FaqI GGGAC 2 cut(s) 224, 293
FatI CATG 6 cut(s) 19, 62, 157, 292, 427, 458
FauI CCCGC 2 cut(s) 23, 270
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 60, 357
FokI GGATG 2 cut(s) 212, 349
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 60, 357
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 60, 357
GsuI CTGGAG 2 cut(s) 234, 321
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 3 cut(s) 73, 285, 314
HgaI GACGC 3 cut(s) 290, 348, 352
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 2 cut(s) 282, 359
Hin1II CATG 6 cut(s) 23, 66, 161, 296, 431, 462
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 3 cut(s) 73, 285, 314
HphI GGTGA 2 cut(s) 122, 372
Hpy166II GTNNAC 2 cut(s) 191, 290
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 191, 290
Hpy99I CGWCG 3 cut(s) 98, 424, 455
HpyAV CCTTC 2 cut(s) 74, 273
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 4, 62
HpyF3I CTNAG 1 cut(s) 174
Hsp92I GRCGYC 2 cut(s) 282, 359
Hsp92II CATG 6 cut(s) 23, 66, 161, 296, 431, 462
HspAI GCGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 4 cut(s) 30, 202, 330, 431
LmnI GCTCC 3 cut(s) 75, 253, 296
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 110
MalI GATC 4 cut(s) 32, 204, 332, 433
MboI GATC 4 cut(s) 30, 202, 330, 431
MboII GAAGA 4 cut(s) 91, 236, 360, 369
MflI RGATCY 2 cut(s) 330, 431
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 138
MluI ACGCGT 1 cut(s) 344
MnlI CCTC 6 cut(s) 101, 174, 270, 296, 376, 405
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 3 cut(s) 73, 285, 314
MspR9I CCNGG 3 cut(s) 252, 315, 404
MvaI CCWGG 2 cut(s) 252, 404
MvnI CGCG 1 cut(s) 346
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 458
NdeII GATC 4 cut(s) 30, 202, 330, 431
NlaIII CATG 6 cut(s) 23, 66, 161, 296, 431, 462
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 66
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 450
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 61, 358
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 250, 402
PspEI GGTNACC 1 cut(s) 110
PspGI CCWGG 2 cut(s) 250, 402
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 2 cut(s) 330, 431
RsaI GTAC 2 cut(s) 291, 312
RsaNI GTAC 2 cut(s) 290, 311
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 2 cut(s) 60, 357
Sau3AI GATC 4 cut(s) 30, 202, 330, 431
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 252, 315, 404
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 72, 112, 250, 301, 307
SfaNI GCATC 1 cut(s) 13
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 1 cut(s) 350
Sse9I AATT 1 cut(s) 138
SsiI CCGC 3 cut(s) 16, 277, 356
SspI AATATT 1 cut(s) 233
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 250, 313, 402
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 102, 179
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 359
TscAI CASTG 2 cut(s) 33, 52
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 33, 52
VpaK11BI GGWCC 1 cut(s) 350
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.