Rh7CG209700

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000323
Physical Location & Seq
Reverse (-)
18769147 .. 18770493
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG209700.1

Sequence Viewer

Length: 555 bp
ATGGTAAGGCTTGAGAGTGAGGTGGCGTTCGTGGGTTTGGTGGAGGGTGGCAAGTGGATGGTTAAATCCAAGAGCAAGACAAGTGAGTATATGGAAGAGATTTACGATGCTGTGGTTGTTTGTTGTGGGCACTATACTAATCCTCGTGTTGCAGAAATTCCAGGTATCACTACATGGAAAGGGAAGCAAATTCACAGCCACAACTATCGGACTCCTGAGCTGTTTCGAGATCAGGTCCGTGACAGTACTTGGAGCTCCAGTAGTGCTACTGATATCTCTCGGGACATCGCTGGAGTTGCCAAAGAGGTTCACATTTCATCTAGATCTGTTGCATCCGAAACCAATGAGAAGAAGCCTTGCTTTAATACGACGCGGCTTAACGCTATGATTAATAGTGGCTATGATAACATGTGGCTTCACTCTAAGATTGAAAGTGTCCATGAAGATGGTAGTGTTGTTTTCACAGATAGGAGTGTTGTCGTTGCTGACACCATTCTTCACTGCACAGGGTATACCTGCTTTGTAATCCTCTGTACTGAATGTGAGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

184

Amino Acids

20.64

Weight (kDa)

5.79

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 15 - 109 1.8e-15 Flavin-binding monooxygenase-like
Pyr_redox_3 PF13738 36 - 173 1.3e-06 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 512
AccII CGCG 1 cut(s) 373
AciI CCGC 1 cut(s) 373
AcsI RAATTY 2 cut(s) 156, 189
AfaI GTAC 2 cut(s) 247, 535
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 1 cut(s) 431
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 220, 255
AluI AGCT 2 cut(s) 220, 255
Alw21I GWGCWC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 279
ApoI RAATTY 2 cut(s) 156, 189
AseI ATTAAT 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 257
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 257
BccI CCATC 2 cut(s) 52, 440
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 97, 341
BpmI CTGGAG 2 cut(s) 241, 312
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bse1I ACTGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 63, 332
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 132, 257
Bsp143I GATC 2 cut(s) 229, 323
BspACI CCGC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 524
BsrI ACTGG 1 cut(s) 258
BssMI GATC 2 cut(s) 229, 323
BssNAI GTATAC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 216, 423
BstF5I GGATG 2 cut(s) 63, 332
BstFNI CGCG 1 cut(s) 373
BstKTI GATC 2 cut(s) 232, 326
BstMBI GATC 2 cut(s) 229, 323
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 446
BstYI RGATCY 1 cut(s) 323
BstZ17I GTATAC 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 63, 332
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 246, 534
CviAII CATG 3 cut(s) 174, 409, 440
CviJI RGCY 8 cut(s) 10, 198, 220, 255, 355, 376, 399, 415
CviKI_1 RGCY 8 cut(s) 10, 198, 220, 255, 355, 376, 399, 415
CviQI GTAC 2 cut(s) 246, 534
DdeI CTNAG 2 cut(s) 216, 423
DpnI GATC 2 cut(s) 231, 325
DpnII GATC 2 cut(s) 229, 323
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 257
FaeI CATG 3 cut(s) 177, 412, 443
FaiI YATR 9 cut(s) 90, 92, 135, 175, 386, 402, 410, 441, 513
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 173, 408, 439
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 70, 319
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 2 cut(s) 241, 312
HgaI GACGC 1 cut(s) 379
Hin1II CATG 3 cut(s) 177, 412, 443
HinfI GANTC 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 310, 513
Hpy188I TCNGA 2 cut(s) 210, 337
Hpy188III TCNNGA 4 cut(s) 215, 227, 281, 321
Hpy8I GTNNAC 2 cut(s) 310, 513
Hpy99I CGWCG 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 152, 332, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 216, 423
Hsp92II CATG 3 cut(s) 177, 412, 443
Kzo9I GATC 2 cut(s) 229, 323
LmnI GCTCC 2 cut(s) 252, 260
LpnPI CCDG 8 cut(s) 147, 174, 218, 228, 271, 276, 492, 529
LweI GCATC 2 cut(s) 97, 341
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 231, 325
MboI GATC 2 cut(s) 229, 323
MboII GAAGA 4 cut(s) 107, 361, 455, 488
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 132, 257
MluCI AATT 2 cut(s) 156, 189
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 6 cut(s) 13, 37, 153, 298, 538, 539
MseI TTAA 4 cut(s) 63, 363, 378, 390
MslI CAYNNNNRTG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 229, 323
NlaIII CATG 3 cut(s) 177, 412, 443
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PscI ACATGT 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 2 cut(s) 247, 535
RsaNI GTAC 2 cut(s) 246, 534
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 257
SaqAI TTAA 4 cut(s) 63, 363, 378, 390
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 2 cut(s) 229, 323
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 132, 257
SetI ASST 8 cut(s) 24, 166, 222, 237, 257, 309, 518, 549
SfaNI GCATC 2 cut(s) 97, 341
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 156, 189
SsiI CCGC 1 cut(s) 373
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 226
TasI AATT 2 cut(s) 156, 189
TatI WGTACW 2 cut(s) 245, 533
TauI GCSGC 1 cut(s) 376
Tru1I TTAA 4 cut(s) 63, 363, 378, 390
Tru9I TTAA 4 cut(s) 63, 363, 378, 390
TscAI CASTG 1 cut(s) 506
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 306, 456
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 156, 189
XbaI TCTAGA 1 cut(s) 320
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.