Rroxscaffold_3G00254500

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000323
Physical Location & Seq
Forward (+)
48727482 .. 48729030
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254500.1

Sequence Viewer

Length: 867 bp
ATGAATTGCCGCATTAGCTCATGGAAAGGAAAGCAAATTCACAGCCACAATTATCGGACTTCTGAGCCATTTCGAGATCAGGTTGTAGTTTTGATAGGGAGCTCTGCTAGTGCTATTGATATTTTTCGGGACATAGTTGGAGTTGTCAAAGAAGTCCACATTGCATCTAGATCCTCTATTGCCTCTGAAACCTCTGAATATAAGCCTGGCTTTCATACCATGTGGCTTAACGCTATGATAAATAGTGGCTACGATAACCTGCGGCTTCACTCTATGATTAAAAGTGTCCATGAAGATGGTAGTGTTGTTTTCGCAGATGGAGGTGTTGTGGTCGCCGACACCATTCTTCACTGCACAGGATACAAGTATCATTTCCCTTTTCTTGAGACCAATGGAATTGTAACTGTGGATGGGAATGACAACCGTGTTGGGCCGTTGTTCAAGCATGTCTTCCCACCTGCCTTTGCACCTTCGCTTTCTTTTGTTGGGGTACCATGGAAGACCGTTCCTTTCCCCAATTCTGAACTTCAAAGCAAGTGGATAGCAGGAGTTTTGTCAAATCGAATTGCACTCCCATCCAAAGAGAAGATGATGGAGAATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACACACTCATGACATTTCTGATTCTCGGGGTGATTATGCTGATTGGCTTGCAGCGCAGTGTGGGTGTCCAGTCTTCGAAGAATGGAGAAAACAAATGATGTTAACAGTAGCAAAGAATTATTTAGTCCGGCCGAAAACATATCAGGATGAGTGGGATGATAACCATTTAGTACTACAAGCTTATAAGGACTTCAAGAAATTCACCACAGATGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

288

Amino Acids

32.47

Weight (kDa)

7.74

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 10 - 134 1.3e-08 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 87 - 205 7.4e-15 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AarI CACCTGC 1 cut(s) 466
Acc36I ACCTGC 2 cut(s) 267, 466
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 2 cut(s) 10, 262
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 2 cut(s) 36, 845
AfaI GTAC 2 cut(s) 492, 819
AgsI TTSAA 4 cut(s) 442, 530, 626, 841
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 5 cut(s) 18, 102, 608, 629, 827
AluI AGCT 5 cut(s) 18, 102, 608, 629, 827
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 2 cut(s) 431, 776
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 2 cut(s) 36, 845
Asp718I GGTACC 1 cut(s) 490
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 689, 841
AsuII TTCGAA 1 cut(s) 723
AvaI CYCGRG 1 cut(s) 672
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 3 cut(s) 442, 506, 712
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 710
BccI CCATC 6 cut(s) 290, 311, 404, 583, 586, 851
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 2 cut(s) 108, 168
BfuAI ACCTGC 2 cut(s) 267, 466
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 3 cut(s) 10, 263, 699
BlsI GCNGC 3 cut(s) 11, 264, 700
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 3 cut(s) 442, 506, 712
Bpu14I TTCGAA 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 1 cut(s) 716
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 4 cut(s) 415, 575, 799, 808
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 716
BseX3I CGGCCG 1 cut(s) 776
BseXI GCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 779
BshFI GGCC 2 cut(s) 433, 778
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 433, 778
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 672
Bsp119I TTCGAA 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 76, 170
Bsp19I CCATGG 1 cut(s) 494
BspACI CCGC 2 cut(s) 10, 262
BspANI GGCC 2 cut(s) 433, 778
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 492
BspMI ACCTGC 2 cut(s) 267, 466
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 716
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 76, 170
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 4 cut(s) 406, 425, 505, 754
Bst6I CTCTTC 1 cut(s) 622
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 4 cut(s) 415, 575, 799, 808
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 2 cut(s) 79, 173
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 2 cut(s) 76, 170
BstMCI CGRYCG 1 cut(s) 779
BstMWI GCNNNNNNNGC 2 cut(s) 15, 700
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 710
BstV2I GAAGAC 3 cut(s) 442, 506, 712
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 776
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 2 cut(s) 433, 778
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 4 cut(s) 415, 575, 799, 808
BtsI GCAGTG 2 cut(s) 349, 710
BtsIMutI CAGTG 2 cut(s) 349, 710
BveI ACCTGC 2 cut(s) 267, 466
Cac8I GCNNGC 1 cut(s) 696
CciI TCATGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 491, 818
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 6 cut(s) 21, 220, 290, 446, 495, 656
CviQI GTAC 2 cut(s) 491, 818
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 78, 172
DpnII GATC 2 cut(s) 76, 170
EaeI YGGCCR 1 cut(s) 776
EagI CGGCCG 1 cut(s) 776
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
Ecl136II GAGCTC 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 380
Eco52I CGGCCG 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 6 cut(s) 24, 223, 293, 449, 498, 659
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 434, 466
FaqI GGGAC 1 cut(s) 143
FatI CATG 6 cut(s) 20, 219, 289, 445, 494, 655
Fnu4HI GCNGC 3 cut(s) 10, 263, 699
FokI GGATG 4 cut(s) 422, 562, 806, 815
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 10, 263, 699
FspBI CTAG 2 cut(s) 108, 168
GlaI GCGC 1 cut(s) 702
GluI GCNGC 3 cut(s) 10, 263, 699
HaeIII GGCC 2 cut(s) 433, 778
HapII CCGG 1 cut(s) 775
HhaI GCGC 1 cut(s) 703
Hin1II CATG 6 cut(s) 24, 223, 293, 449, 498, 659
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 3 cut(s) 606, 627, 825
HinfI GANTC 1 cut(s) 668
HpaI GTTAAC 1 cut(s) 750
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 689, 841
Hpy166II GTNNAC 2 cut(s) 157, 750
Hpy188I TCNGA 6 cut(s) 57, 64, 187, 196, 523, 667
Hpy188III TCNNGA 7 cut(s) 74, 128, 168, 383, 656, 791, 841
Hpy8I GTNNAC 2 cut(s) 157, 750
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 4 cut(s) 406, 425, 505, 754
HpyCH4V TGCA 5 cut(s) 164, 354, 467, 569, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 700
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 6 cut(s) 24, 223, 293, 449, 498, 659
HspAI GCGC 1 cut(s) 701
KpnI GGTACC 1 cut(s) 494
KspAI GTTAAC 1 cut(s) 750
Kzo9I GATC 2 cut(s) 76, 170
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 710
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 108, 168
MaeIII GTNAC 1 cut(s) 400
MalI GATC 2 cut(s) 78, 172
MboI GATC 2 cut(s) 76, 170
MboII GAAGA 8 cut(s) 305, 338, 442, 511, 598, 609, 712, 737
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 8 cut(s) 4, 36, 49, 396, 517, 564, 763, 845
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 4 cut(s) 184, 193, 202, 314
MseI TTAA 4 cut(s) 228, 279, 749, 865
MslI CAYNNNNRTG 2 cut(s) 294, 654
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 15, 700
NcoI CCATGG 1 cut(s) 494
NdeII GATC 2 cut(s) 76, 170
NlaIII CATG 6 cut(s) 24, 223, 293, 449, 498, 659
NlaIV GGNNCC 1 cut(s) 492
NspI RCATGY 1 cut(s) 449
NspV TTCGAA 1 cut(s) 723
PagI TCATGA 1 cut(s) 655
PaqCI CACCTGC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 3 cut(s) 11, 264, 700
PsiI TTATAA 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 492, 819
RsaNI GTAC 2 cut(s) 491, 818
RseI CAYNNNNRTG 2 cut(s) 294, 654
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 228, 279, 749, 865
SatI GCNGC 3 cut(s) 10, 263, 699
Sau3AI GATC 2 cut(s) 76, 170
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 819
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 294, 654
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 8 cut(s) 4, 36, 49, 396, 517, 564, 763, 845
SsiI CCGC 2 cut(s) 10, 262
SspMI CTAG 2 cut(s) 108, 168
SstI GAGCTC 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 4 cut(s) 406, 425, 505, 754
TaqI TCGA 3 cut(s) 73, 562, 723
TasI AATT 8 cut(s) 4, 36, 49, 396, 517, 564, 763, 845
TatI WGTACW 1 cut(s) 817
TauI GCSGC 2 cut(s) 12, 265
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 4 cut(s) 228, 279, 749, 865
Tru9I TTAA 4 cut(s) 228, 279, 749, 865
TscAI CASTG 2 cut(s) 356, 710
TseI GCWGC 1 cut(s) 698
TspDTI ATGAA 3 cut(s) 17, 203, 306
TspRI CASTG 2 cut(s) 356, 710
XapI RAATTY 2 cut(s) 36, 845
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 449
XspI CTAG 2 cut(s) 108, 168
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.