Rh7DG206000

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000323
Physical Location & Seq
Reverse (-)
19540817 .. 19541212
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG206000.1

Sequence Viewer

Length: 396 bp
ATGGAGTCTAACCCAATTGGTGTCCACCCAAACAGAAACATAGTCTACTCGAGCATGTACCAGTCTCTCAGGATCAACCTCCCCAGAGAGATCATGGGGTTCCGGGACTACCTATTTGCGGCCAAGGAAGAAGATGAAGATAGAGACTCGAGAAGGTTTACGGGTCACAGAGAGGTGTTGAAGTACTTGAATGACTTCGCCGGCGAGTTTGGGATTTGTGAGATGGTGAGGTTTGAGACTGAAGTGGTGTTCGTGGGTTTGATGGAGGGTGGCAAGTGGATGGTGAAGTCTAAGAGCAAGAGAGGTGAGGATTTGGAAGAGATTTATGATGCTGTGGTTGTCTGTAATGGCCATTCTACTGAGCCCCGTGTGGCCCAAATTGAAGGTATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

131

Amino Acids

15.15

Weight (kDa)

5.03

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 17 - 124 1.2e-11 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 2 cut(s) 120, 349
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 59, 185
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 181, 190, 383
Alw26I GTCTC 3 cut(s) 69, 138, 230
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 2 cut(s) 49, 148
AoxI GGCC 3 cut(s) 120, 349, 372
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 238, 295, 317
AvaI CYCGRG 2 cut(s) 49, 148
BalI TGGCCA 1 cut(s) 351
BanII GRGCYC 1 cut(s) 366
BccI CCATC 3 cut(s) 217, 256, 274
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 3 cut(s) 69, 138, 230
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 104
BmeT110I CYCGRG 2 cut(s) 49, 148
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 319
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 82, 351
BseNI ACTGG 1 cut(s) 61
BshFI GGCC 3 cut(s) 122, 351, 374
BsiHKCI CYCGRG 2 cut(s) 49, 148
BsiSI CCGG 2 cut(s) 103, 201
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 3 cut(s) 69, 138, 230
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 3 cut(s) 122, 351, 374
BsoBI CYCGRG 2 cut(s) 49, 148
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 72, 90
BspACI CCGC 1 cut(s) 119
BspANI GGCC 3 cut(s) 122, 351, 374
BspCNI CTCAG 2 cut(s) 81, 352
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 72, 90
BssT1I CCWWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 68, 291, 360
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 2 cut(s) 75, 93
BstMAI GTCTC 3 cut(s) 69, 138, 230
BstMBI GATC 2 cut(s) 72, 90
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 102
BsuRI GGCC 3 cut(s) 122, 351, 374
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 58, 184
CviAII CATG 2 cut(s) 55, 94
CviJI RGCY 4 cut(s) 122, 351, 364, 374
CviKI_1 RGCY 4 cut(s) 122, 351, 364, 374
CviQI GTAC 2 cut(s) 58, 184
DdeI CTNAG 3 cut(s) 68, 291, 360
DpnI GATC 2 cut(s) 74, 92
DpnII GATC 2 cut(s) 72, 90
EaeI YGGCCR 2 cut(s) 120, 349
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 2 cut(s) 49, 148
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 58, 97
FaiI YATR 5 cut(s) 41, 56, 95, 327, 389
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 54, 93
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 122, 351, 374
HapII CCGG 2 cut(s) 103, 201
Hin1II CATG 2 cut(s) 58, 97
HinfI GANTC 2 cut(s) 5, 146
HpaII CCGG 2 cut(s) 103, 201
HphI GGTGA 3 cut(s) 238, 295, 317
Hpy166II GTNNAC 3 cut(s) 25, 46, 159
Hpy188III TCNNGA 2 cut(s) 70, 150
Hpy8I GTNNAC 3 cut(s) 25, 46, 159
HpyAV CCTTC 2 cut(s) 147, 377
HpyF3I CTNAG 3 cut(s) 68, 291, 360
Hsp92II CATG 2 cut(s) 58, 97
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 72, 90
LpnPI CCDG 5 cut(s) 55, 74, 97, 116, 214
LweI GCATC 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 74, 92
MboI GATC 2 cut(s) 72, 90
MboII GAAGA 4 cut(s) 140, 143, 149, 329
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 2 cut(s) 15, 378
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 2 cut(s) 14, 140
MnlI CCTC 6 cut(s) 89, 166, 222, 259, 296, 301
Mox20I TGGCCA 1 cut(s) 351
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 194
MscI TGGCCA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 351
MspI CCGG 2 cut(s) 103, 201
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 15
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 72, 90
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 58, 97
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 58
PaeR7I CTCGAG 2 cut(s) 49, 148
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 13, 140
PpsI GAGTC 2 cut(s) 13, 140
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 49
RsaI GTAC 2 cut(s) 59, 185
RsaNI GTAC 2 cut(s) 58, 184
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 72, 90
Sau96I GGNCC 1 cut(s) 373
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 14, 140
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 366
SetI ASST 7 cut(s) 81, 114, 158, 177, 233, 307, 388
SfaNI GCATC 1 cut(s) 319
Sfr274I CTCGAG 2 cut(s) 49, 148
SgrAI CRCCGGYG 1 cut(s) 200
SlaI CTCGAG 2 cut(s) 49, 148
SmlI CTYRAG 2 cut(s) 49, 148
SmoI CTYRAG 2 cut(s) 49, 148
Sse9I AATT 2 cut(s) 15, 378
SsiI CCGC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 2 cut(s) 50, 149
TasI AATT 2 cut(s) 15, 378
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 122
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 150
XceI RCATGY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XhoI CTCGAG 2 cut(s) 49, 148
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.