Rmu_sc0001389.1_g000002

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001389.1
OG0000323
Physical Location & Seq
Reverse (-)
23876 .. 26708
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001389.1_g000002.1.cds

Sequence Viewer

Length: 1005 bp
ctggagggtggaaagtggaaggtgaagtccaagagcaagagagttgaggttttggaagaggtttatgatgctgtggtggtgtgtaatggacatcatactgagccacgtgtagctcagatttcaggcatcgatacatggaaggggaagcaaattcacagtcacaattatcgtactcctgagccatttagagatcaggttgtaattttgataggcagcgccgctagtgctgttgatatatctcgggagatagctggagttgctaaagaagtccacattgcatctagatctgttgctgatgaaaccattgaaaagcaccctggctatgataacttgtggcttcactcaatggtaaaagaattcacccatgatcagatcatcagaagtgtccatgaagatggtagtgttgttttccaagatggtagtgttgtccgtgctgacatcattcttcactgcacagggtacaaatatcattttccatttctcgaaacgaatggcattgtgattgtggatgacaatcgtgttgagccagtgtacaagcatgtcttcccacctgtctttgctccttcgctttcctttgttggaataccatggaaggtcgctcctttcttcatgtttgaacttcaaagcaagtggatagctggtgttttgtctaatcgaattgcacttccatcccaagaggacatgatggaggatgtcagagctttctactctttacttgaagcttctgacacacctaagcgatacactcataacattgctgatcatcagtttggatatgacgattgggttgcaactgagtgtgggtgtccaatatctgaggaatggagaaaggaaatgtactttgcagctatacagaacatgctaaccaaaccagagacataccgggatgagtgggtcgaatatgaccatttagtatcgcaagctcacgaggacttcaagaaatatgccttaaatggacatataattcttgatcaaaagaaagtggacatgttaatggataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

334

Amino Acids

38.32

Weight (kDa)

5.63

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 150, 356
AcvI CACGTG 1 cut(s) 107
AfaI GTAC 4 cut(s) 172, 461, 533, 839
AflIII ACRYGT 2 cut(s) 106, 987
AgsI TTSAA 5 cut(s) 308, 617, 623, 719, 937
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 7 cut(s) 113, 251, 638, 701, 722, 848, 923
AluI AGCT 7 cut(s) 113, 251, 638, 701, 722, 848, 923
Alw26I GTCTC 1 cut(s) 869
Ama87I CYCGRG 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 213, 845
ApoI RAATTY 2 cut(s) 150, 356
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AspLEI GCGC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 884
AsuHPI GGTGA 2 cut(s) 34, 352
AvaI CYCGRG 1 cut(s) 240
BauI CACGAG 1 cut(s) 926
BbrPI CACGTG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 225, 857
BccI CCATC 4 cut(s) 389, 410, 676, 679
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 3 cut(s) 367, 760, 970
BcnI CCSGG 1 cut(s) 884
BcoDI GTCTC 1 cut(s) 869
BfaI CTAG 2 cut(s) 222, 282
BfoI RGCGCY 1 cut(s) 219
BglII AGATCT 1 cut(s) 284
BisI GCNGC 3 cut(s) 214, 219, 846
BlsI GCNGC 3 cut(s) 215, 220, 847
Bme1390I CCNGG 2 cut(s) 318, 884
BmeT110I CYCGRG 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 318, 884
BmsI GCATC 3 cut(s) 58, 135, 287
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 2 cut(s) 23, 273
Bpu10I CCTNAGC 2 cut(s) 177, 735
BpuMI CCSGG 1 cut(s) 884
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 316, 587
Bse1I ACTGG 1 cut(s) 527
Bse3DI GCAATG 2 cut(s) 273, 753
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 316, 587
BseGI GGATG 4 cut(s) 514, 668, 697, 892
BseJI GATNNNNATC 1 cut(s) 513
BseMI GCAATG 2 cut(s) 273, 753
BseMII CTCAG 5 cut(s) 90, 128, 168, 786, 807
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 225, 857
BsgI GTGCAG 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 883
BsmAI GTCTC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 6 cut(s) 190, 284, 367, 372, 760, 970
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 5 cut(s) 91, 127, 169, 787, 808
BspDI ATCGAT 1 cut(s) 129
BsrDI GCAATG 2 cut(s) 273, 753
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 2 cut(s) 316, 587
BssMI GATC 6 cut(s) 190, 284, 367, 372, 760, 970
BssSI CACGAG 1 cut(s) 926
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 926
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 531
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 921
BstDEI CTNAG 6 cut(s) 99, 114, 177, 735, 795, 816
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 4 cut(s) 514, 668, 697, 892
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 6 cut(s) 193, 287, 370, 375, 763, 973
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 6 cut(s) 190, 284, 367, 372, 760, 970
BstMWI GCNNNNNNNGC 2 cut(s) 224, 257
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 3 cut(s) 542, 862, 991
BstSCI CCNGG 2 cut(s) 316, 882
BstV1I GCAGC 2 cut(s) 225, 857
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 4 cut(s) 514, 668, 697, 892
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 448, 534
Cac8I GCNNGC 1 cut(s) 921
CfoI GCGC 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 4 cut(s) 171, 460, 532, 838
CspCI CAANNNNNGTGG 2 cut(s) 611, 646
CviAII CATG 9 cut(s) 135, 365, 389, 539, 588, 610, 682, 859, 988
CviQI GTAC 4 cut(s) 171, 460, 532, 838
DdeI CTNAG 6 cut(s) 99, 114, 177, 735, 795, 816
DpnI GATC 6 cut(s) 192, 286, 369, 374, 762, 972
DpnII GATC 6 cut(s) 190, 284, 367, 372, 760, 970
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 587
Eco72I CACGTG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 9 cut(s) 138, 368, 392, 542, 591, 613, 685, 862, 991
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FatI CATG 9 cut(s) 134, 364, 388, 538, 587, 609, 681, 858, 987
FbaI TGATCA 3 cut(s) 367, 760, 970
Fnu4HI GCNGC 3 cut(s) 214, 219, 846
FokI GGATG 4 cut(s) 521, 655, 704, 899
Fsp4HI GCNGC 3 cut(s) 214, 219, 846
FspBI CTAG 2 cut(s) 222, 282
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 214, 219, 846
GsuI CTGGAG 2 cut(s) 23, 273
HaeII RGCGCY 1 cut(s) 219
HapII CCGG 1 cut(s) 883
HhaI GCGC 1 cut(s) 218
Hin1II CATG 9 cut(s) 138, 368, 392, 542, 591, 613, 685, 862, 991
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 720
HpaII CCGG 1 cut(s) 883
HphI GGTGA 2 cut(s) 34, 352
Hpy166II GTNNAC 3 cut(s) 271, 532, 985
Hpy188I TCNGA 6 cut(s) 117, 372, 380, 698, 727, 817
Hpy188III TCNNGA 7 cut(s) 176, 242, 282, 482, 926, 937, 968
Hpy8I GTNNAC 3 cut(s) 271, 532, 985
HpyAV CCTTC 4 cut(s) 13, 133, 573, 586
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 278, 453, 662, 791, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 257
HpyF3I CTNAG 6 cut(s) 99, 114, 177, 735, 795, 816
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 9 cut(s) 138, 368, 392, 542, 591, 613, 685, 862, 991
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 3 cut(s) 367, 760, 970
Kzo9I GATC 6 cut(s) 190, 284, 367, 372, 760, 970
LmnI GCTCC 2 cut(s) 565, 604
Lsp1109I GCAGC 2 cut(s) 225, 857
LweI GCATC 3 cut(s) 58, 135, 287
MaeI CTAG 2 cut(s) 222, 282
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 158
MalI GATC 6 cut(s) 192, 286, 369, 374, 762, 972
MboI GATC 6 cut(s) 190, 284, 367, 372, 760, 970
MboII GAAGA 5 cut(s) 68, 404, 437, 535, 598
MflI RGATCY 1 cut(s) 284
MluCI AATT 6 cut(s) 150, 163, 201, 356, 657, 963
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 6 cut(s) 40, 52, 670, 682, 811, 922
MseI TTAA 2 cut(s) 950, 992
MslI CAYNNNNRTG 2 cut(s) 393, 992
MspI CCGG 1 cut(s) 883
MspR9I CCNGG 2 cut(s) 318, 884
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 224, 257
NciI CCSGG 1 cut(s) 884
NcoI CCATGG 1 cut(s) 587
NdeII GATC 6 cut(s) 190, 284, 367, 372, 760, 970
NlaIII CATG 9 cut(s) 138, 368, 392, 542, 591, 613, 685, 862, 991
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 3 cut(s) 542, 862, 991
PciI ACATGT 1 cut(s) 987
PkrI GCNGC 3 cut(s) 215, 220, 847
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
PscI ACATGT 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 316
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 4 cut(s) 172, 461, 533, 839
RsaNI GTAC 4 cut(s) 171, 460, 532, 838
RseI CAYNNNNRTG 2 cut(s) 393, 992
SaqAI TTAA 2 cut(s) 950, 992
SatI GCNGC 3 cut(s) 214, 219, 846
Sau3AI GATC 6 cut(s) 190, 284, 367, 372, 760, 970
ScrFI CCNGG 2 cut(s) 318, 884
SfaNI GCATC 3 cut(s) 58, 135, 287
SmiMI CAYNNNNRTG 2 cut(s) 393, 992
Sse9I AATT 6 cut(s) 150, 163, 201, 356, 657, 963
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 222, 282
StyD4I CCNGG 2 cut(s) 316, 882
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 109
TaqI TCGA 4 cut(s) 129, 483, 655, 897
TasI AATT 6 cut(s) 150, 163, 201, 356, 657, 963
TatI WGTACW 2 cut(s) 531, 837
TauI GCSGC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 950, 992
Tru9I TTAA 2 cut(s) 950, 992
TscAI CASTG 2 cut(s) 455, 534
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 213, 845
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 312, 405, 598
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 455, 534
XapI RAATTY 2 cut(s) 150, 356
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 3 cut(s) 542, 862, 991
XspI CTAG 2 cut(s) 222, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.