Rmu_sc0001389.1_g000004

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001389.1
OG0000323
Physical Location & Seq
Reverse (-)
46950 .. 47192
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001389.1_g000004.1.cds

Sequence Viewer

Length: 243 bp
atggctgattctccttcttctcgttcggctacgatgcatcccttatcccgccacgtaacagtgatcggtgctggtgccagcggcttggtggcggcacgtgagctgctgcgggaaggtcacactattgtcgtcttcgagcgaggagaccaaatcggtggcacttgggtctacactccagaagtggagtccgacccagttgggattgacccggatagaaccagggtccactcgagcatgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

80

Amino Acids

8.62

Weight (kDa)

5.69

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 168
AciI CCGC 4 cut(s) 49, 81, 92, 109
AcvI CACGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 103, 106
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 74
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 90, 93
BciT130I CCWGG 1 cut(s) 220
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 241
BisI GCNGC 4 cut(s) 82, 93, 104, 107
BlsI GCNGC 4 cut(s) 83, 94, 105, 108
Bme1390I CCNGG 2 cut(s) 209, 220
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 76, 224
BmrFI CCNGG 2 cut(s) 209, 220
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 24, 46
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 2 cut(s) 55, 98
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 90, 93
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 4 cut(s) 49, 81, 92, 109
BspLI GGNNCC 2 cut(s) 76, 224
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 61
BstBAI YACGTR 2 cut(s) 55, 98
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 207, 218
BstV1I GCAGC 2 cut(s) 90, 93
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 2 cut(s) 85, 155
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 235
CviJI RGCY 4 cut(s) 5, 29, 84, 103
CviKI_1 RGCY 4 cut(s) 5, 29, 84, 103
CviQI GTAC 1 cut(s) 238
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 223
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 39
FaeI CATG 1 cut(s) 238
FaiI YATR 1 cut(s) 236
FatI CATG 1 cut(s) 234
FauI CCCGC 2 cut(s) 56, 102
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 82, 93, 104, 107
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 4 cut(s) 82, 93, 104, 107
FspBI CTAG 1 cut(s) 241
GluI GCNGC 4 cut(s) 82, 93, 104, 107
GsuI CTGGAG 1 cut(s) 159
HapII CCGG 1 cut(s) 209
Hin1II CATG 1 cut(s) 238
HinfI GANTC 2 cut(s) 8, 185
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 169, 226
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 169, 226
HpyAV CCTTC 2 cut(s) 24, 107
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 54, 97
HpyCH4V TGCA 1 cut(s) 37
HpySE526I ACGT 2 cut(s) 54, 97
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 57, 91, 189, 205, 207, 222, 232
Lsp1109I GCAGC 2 cut(s) 90, 93
LweI GCATC 2 cut(s) 24, 46
MaeI CTAG 1 cut(s) 241
MaeII ACGT 2 cut(s) 54, 97
MaeIII GTNAC 2 cut(s) 55, 116
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 9, 124
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 209, 220
MvaI CCWGG 1 cut(s) 220
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 76, 224
NmuCI GTSAC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 229
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 83, 94, 105, 108
PleI GAGTC 1 cut(s) 193
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 55, 98
Psp6I CCWGG 1 cut(s) 218
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 76, 224
PspPI GGNCC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 229
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 4 cut(s) 82, 93, 104, 107
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 209, 220
SetI ASST 4 cut(s) 57, 100, 105, 118
SfaNI GCATC 2 cut(s) 24, 46
Sfr274I CTCGAG 1 cut(s) 229
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SsiI CCGC 4 cut(s) 49, 81, 92, 109
SspMI CTAG 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 207, 218
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 57, 100
TaqI TCGA 2 cut(s) 135, 230
TatI WGTACW 1 cut(s) 237
TauI GCSGC 2 cut(s) 84, 95
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 103, 106
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.