RLG00000003594

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000323
Physical Location & Seq
Forward (+)
50469412 .. 50471535
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003594

Sequence Viewer

Length: 1020 bp
ATGTATTTACAGGACTTCGCGAGCGAGTTTGGGATTTCTGAGATGGTGAGGCTTGAGAGTGAGGTGGAGTTCGTGGGTTCGGTGGTGGGTGGCAAGTGGATGGTTAAGTCCAAGAGCAAGATAAGTGAGTATATGGAAGAGATTTACGATGCTGTGGTTGTTTATTGTGGGCACTATACTAATTCTCGTGTTGCAGAAATTCCAGGTATCACTACGTGGAAAGGAAAGCAAATTGACAGCCATAACTATCGGACTCCTGAGCTGTTTCGAGATCAGACATTAACTTTGATTGTTTGGTGCCTGCTTTGCATAGGTTATAGTTTTGATAAGGATCGGAGCTCCAGTAGTGCTACTGATATCTCTCGGGATATCGCTGGAGTTGCCAAAGAGGTTCACATTTCATCTAGATCTGTTGCTTCCGAAACCAATGACCAGAATGCTGTTTTCGCAGATGGGAGTGTTATCGTTGTTGACACCATTCTTCACTGCACAAGGTACAAATATCATTTTCCTTTTCTCGAAACCAATGGCATTGTAACAGTTGATGAGGATGACAAACTTGTCGGGCTACTGTACGTTCAAGCATGTCTTCCCATCTGCCTTGGCACCGTTGCTTTCCTTTGTCGGGGTACCATCGAAGGTACCCTTCCTTTCCCCAATTTTGAACTTCAAAGCAAGTGGATAGCAGGAGTTTTGTCTAATCGGATTGCTCTTCCATCTCAAGAGGAGATGATGGAGGATGTCAAAGCTTTTTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACAAACCCATGACATTGCTGATTATCAGGGCGATTATGCTGATTGGCTTGCAGCGCAGTGTGGGAGTCTAGTCTTTGAAGAATGGAAAAAACAAATAATGTTCGCAGTAGCAAAGAATTATCTAGTCCGGCCGAAGACAAATCACGATGAGTGGGATGATGACCATTTAGTGCTGCAAGCTTATAAGGACTTTTGGAAATTCACCACAGATGGATCGAGTTTAACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

340

Amino Acids

38.37

Weight (kDa)

4.93

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 2 - 137 4.5e-11 Flavin-binding monooxygenase-like
FMO-like PF00743 137 - 271 3.2e-11 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
AasI GACNNNNNNGTC 1 cut(s) 560
Acc65I GGTACC 2 cut(s) 629, 641
AccB1I GGYRCC 4 cut(s) 297, 605, 629, 641
AccII CGCG 1 cut(s) 20
AclWI GGATC 2 cut(s) 339, 1009
AcoI YGGCCR 1 cut(s) 917
AcsI RAATTY 2 cut(s) 198, 986
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 4 cut(s) 497, 575, 631, 643
AfiI CCNNNNNNNGG 1 cut(s) 625
AgsI TTSAA 5 cut(s) 581, 665, 671, 767, 866
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 5 cut(s) 262, 339, 749, 770, 968
AluI AGCT 5 cut(s) 262, 339, 749, 770, 968
Alw21I GWGCWC 1 cut(s) 341
AlwI GGATC 2 cut(s) 339, 1009
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 1 cut(s) 917
ApeKI GCWGC 2 cut(s) 839, 961
ApoI RAATTY 2 cut(s) 198, 986
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
Asp718I GGTACC 2 cut(s) 629, 641
AspLEI GCGC 1 cut(s) 844
AsuHPI GGTGA 2 cut(s) 58, 982
AvaI CYCGRG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 174
BanI GGYRCC 4 cut(s) 297, 605, 629, 641
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 581, 929
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 851, 948
BccI CCATC 8 cut(s) 37, 94, 446, 602, 641, 724, 727, 992
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 3 cut(s) 405, 857, 911
BglII AGATCT 1 cut(s) 407
BisI GCNGC 2 cut(s) 840, 962
BlsI GCNGC 2 cut(s) 841, 963
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 363
BmiI GGNNCC 4 cut(s) 299, 607, 631, 643
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 581, 929
BpmI CTGGAG 2 cut(s) 325, 396
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 74, 705
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 801
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 4 cut(s) 105, 556, 745, 949
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 30, 249
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 174
BseX3I CGGCCG 1 cut(s) 917
BseXI GCAGC 2 cut(s) 851, 948
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 920
BshFI GGCC 1 cut(s) 919
BshNI GGYRCC 4 cut(s) 297, 605, 629, 641
BsiEI CGRYCG 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 916
BslI CCNNNNNNNGG 1 cut(s) 625
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 919
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 174, 341
Bsp143I GATC 4 cut(s) 271, 331, 407, 1001
Bsp68I TCGCGA 1 cut(s) 20
BspANI GGCC 1 cut(s) 919
BspCNI CTCAG 2 cut(s) 31, 250
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 4 cut(s) 299, 607, 631, 643
BspPI GGATC 2 cut(s) 339, 1009
BspQI GCTCTTC 1 cut(s) 717
BspT107I GGYRCC 4 cut(s) 297, 605, 629, 641
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 4 cut(s) 271, 331, 407, 1001
BssSI CACGAG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 541, 573, 610
Bst6I CTCTTC 3 cut(s) 132, 717, 763
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 22, 302, 837, 966
BstDEI CTNAG 2 cut(s) 39, 258
BstF5I GGATG 4 cut(s) 105, 556, 745, 949
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 4 cut(s) 274, 334, 410, 1004
BstMBI GATC 4 cut(s) 271, 331, 407, 1001
BstMCI CGRYCG 1 cut(s) 920
BstMWI GCNNNNNNNGC 4 cut(s) 306, 380, 446, 841
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 851, 948
BstV2I GAAGAC 2 cut(s) 581, 929
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BstZI CGGCCG 1 cut(s) 917
BsuRI GGCC 1 cut(s) 919
BtsCI GGATG 4 cut(s) 105, 556, 745, 949
BtsI GCAGTG 2 cut(s) 484, 851
BtsIMutI CAGTG 2 cut(s) 484, 851
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 4 cut(s) 22, 302, 837, 966
CfoI GCGC 1 cut(s) 844
Csp6I GTAC 4 cut(s) 496, 574, 630, 642
CspCI CAANNNNNGTGG 2 cut(s) 659, 694
CviAII CATG 2 cut(s) 585, 797
CviQI GTAC 4 cut(s) 496, 574, 630, 642
DdeI CTNAG 2 cut(s) 39, 258
DpnI GATC 4 cut(s) 273, 333, 409, 1003
DpnII GATC 4 cut(s) 271, 331, 407, 1001
DraIII CACNNNGTG 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 917
EagI CGGCCG 1 cut(s) 917
Eam1104I CTCTTC 3 cut(s) 132, 717, 763
EarI CTCTTC 3 cut(s) 132, 717, 763
Ecl136II GAGCTC 1 cut(s) 339
EclXI CGGCCG 1 cut(s) 917
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 341
Eco32I GATATC 2 cut(s) 358, 370
Eco52I CGGCCG 1 cut(s) 917
Eco53kI GAGCTC 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 202
EcoRV GATATC 2 cut(s) 358, 370
EcoT14I CCWWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 2 cut(s) 588, 800
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 630, 662
FatI CATG 2 cut(s) 584, 796
Fnu4HI GCNGC 2 cut(s) 840, 962
FokI GGATG 4 cut(s) 112, 563, 752, 956
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 840, 962
FspBI CTAG 3 cut(s) 405, 857, 911
GlaI GCGC 1 cut(s) 843
GluI GCNGC 2 cut(s) 840, 962
GsuI CTGGAG 2 cut(s) 325, 396
HaeIII GGCC 1 cut(s) 919
HapII CCGG 1 cut(s) 916
HhaI GCGC 1 cut(s) 844
Hin1II CATG 2 cut(s) 588, 800
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 3 cut(s) 747, 768, 966
HinfI GANTC 2 cut(s) 253, 853
HpaII CCGG 1 cut(s) 916
HphI GGTGA 2 cut(s) 58, 982
Hpy166II GTNNAC 2 cut(s) 394, 472
Hpy188I TCNGA 6 cut(s) 40, 252, 276, 336, 421, 705
Hpy188III TCNNGA 8 cut(s) 19, 257, 269, 365, 405, 518, 722, 932
Hpy8I GTNNAC 2 cut(s) 394, 472
HpyAV CCTTC 2 cut(s) 632, 656
HpyCH4III ACNGT 3 cut(s) 541, 573, 610
HpyCH4IV ACGT 2 cut(s) 215, 576
HpyCH4V TGCA 5 cut(s) 194, 309, 489, 839, 964
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 380, 446, 841
HpyF3I CTNAG 2 cut(s) 39, 258
HpySE526I ACGT 2 cut(s) 215, 576
Hsp92II CATG 2 cut(s) 588, 800
HspAI GCGC 1 cut(s) 842
KpnI GGTACC 2 cut(s) 633, 645
Kzo9I GATC 4 cut(s) 271, 331, 407, 1001
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 336, 344
Lsp1109I GCAGC 2 cut(s) 851, 948
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 405, 857, 911
MaeII ACGT 2 cut(s) 215, 576
MaeIII GTNAC 1 cut(s) 535
MalI GATC 4 cut(s) 273, 333, 409, 1003
MboI GATC 4 cut(s) 271, 331, 407, 1001
MboII GAAGA 7 cut(s) 149, 473, 581, 704, 750, 878, 934
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 2 cut(s) 174, 341
MluCI AATT 6 cut(s) 181, 198, 231, 658, 904, 986
MlyI GAGTC 2 cut(s) 247, 862
MnlI CCTC 6 cut(s) 42, 55, 382, 541, 718, 730
MseI TTAA 3 cut(s) 105, 281, 1010
MspI CCGG 1 cut(s) 916
MspR9I CCNGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 306, 380, 446, 841
NdeII GATC 4 cut(s) 271, 331, 407, 1001
NlaIII CATG 2 cut(s) 588, 800
NlaIV GGNNCC 4 cut(s) 299, 607, 631, 643
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 1 cut(s) 442
PkrI GCNGC 2 cut(s) 841, 963
PleI GAGTC 2 cut(s) 247, 861
PpsI GAGTC 2 cut(s) 247, 861
Ppu21I YACGTR 1 cut(s) 216
PsiI TTATAA 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 299, 607, 631, 643
PsuI RGATCY 1 cut(s) 407
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 4 cut(s) 497, 575, 631, 643
RsaNI GTAC 4 cut(s) 496, 574, 630, 642
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 105, 281, 1010
SatI GCNGC 2 cut(s) 840, 962
Sau3AI GATC 4 cut(s) 271, 331, 407, 1001
SchI GAGTC 2 cut(s) 247, 862
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 174, 341
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 53, 720
SmoI CTYRAG 2 cut(s) 53, 720
Sse9I AATT 6 cut(s) 181, 198, 231, 658, 904, 986
SspMI CTAG 3 cut(s) 405, 857, 911
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 3 cut(s) 541, 573, 610
TaiI ACGT 2 cut(s) 218, 579
TaqI TCGA 4 cut(s) 268, 519, 636, 1004
TasI AATT 6 cut(s) 181, 198, 231, 658, 904, 986
Tru1I TTAA 3 cut(s) 105, 281, 1010
Tru9I TTAA 3 cut(s) 105, 281, 1010
TscAI CASTG 2 cut(s) 491, 851
TseI GCWGC 2 cut(s) 839, 961
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 2 cut(s) 491, 851
XapI RAATTY 2 cut(s) 198, 986
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 1 cut(s) 588
XspI CTAG 3 cut(s) 405, 857, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.