Rroxscaffold_3G00254580

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000323
Physical Location & Seq
Forward (+)
48838106 .. 48838858
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254580.1

Sequence Viewer

Length: 291 bp
ATGATGGAGGATGTCAAAGCTTTCTACTCTTCACTTGAAGCTTCTGGCAAACCTAAACGACAAACCCATGACATTGCTGATTATCAGGGCGATTATGCTGATTGGCTTGCAGCGCAGTGTGGGAGCCCGGTCTTTGAAGAATGGAGAAAACAAATAATGTTCGCAGTAGCAAAGAATTATCTAGTCCGGCCGAAGACATATCACGATGAGTGGGATGATGACCATTTAGTGCTGCAAGCTTATAAGGACTTCTGGAAATTCACCACAGATGGATCGAGTTTAACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

96

Amino Acids

11.3

Weight (kDa)

4.99

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 1 cut(s) 257
AgsI TTSAA 2 cut(s) 38, 137
AluBI AGCT 3 cut(s) 20, 41, 239
AluI AGCT 3 cut(s) 20, 41, 239
AlwI GGATC 1 cut(s) 280
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 110, 232
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 253
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 122, 219
BccI CCATC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 111, 233
BlsI GCNGC 2 cut(s) 112, 234
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 72
BseGI GGATG 2 cut(s) 16, 220
BseMI GCAATG 1 cut(s) 72
BseX3I CGGCCG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 122, 219
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 128, 187
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 272
BspANI GGCC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 108, 237
BstF5I GGATG 2 cut(s) 16, 220
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 275
BstMBI GATC 1 cut(s) 272
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 122, 219
BstV2I GAAGAC 1 cut(s) 200
BstZI CGGCCG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 16, 220
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 108, 237
CfoI GCGC 1 cut(s) 115
CviAII CATG 1 cut(s) 68
CviJI RGCY 6 cut(s) 20, 41, 106, 126, 190, 239
CviKI_1 RGCY 6 cut(s) 20, 41, 106, 126, 190, 239
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 188
EagI CGGCCG 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 1 cut(s) 71
FaiI YATR 4 cut(s) 69, 96, 199, 243
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 111, 233
FokI GGATG 2 cut(s) 23, 227
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 111, 233
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 111, 233
HaeIII GGCC 1 cut(s) 190
HapII CCGG 2 cut(s) 128, 187
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 3 cut(s) 18, 39, 237
HpaII CCGG 2 cut(s) 128, 187
HphI GGTGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 203, 253
HpyCH4V TGCA 2 cut(s) 110, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 5 cut(s) 30, 71, 141, 200, 238
Lsp1109I GCAGC 2 cut(s) 122, 219
MaeI CTAG 1 cut(s) 182
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 3 cut(s) 21, 149, 205
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 175, 257
MseI TTAA 1 cut(s) 281
MspI CCGG 2 cut(s) 128, 187
MspR9I CCNGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 128
NdeII GATC 1 cut(s) 272
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 112, 234
PsiI TTATAA 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 2 cut(s) 111, 233
Sau3AI GATC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 22, 43, 55, 241
Sse9I AATT 2 cut(s) 175, 257
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 275
TasI AATT 2 cut(s) 175, 257
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 122
TseI GCWGC 2 cut(s) 110, 232
TspRI CASTG 1 cut(s) 122
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.