Rmu_co8483553.1_g000001

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8483553.1
OG0000323
Physical Location & Seq
Forward (+)
1 .. 917
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8483553.1_g000001.1.cds

Sequence Viewer

Length: 292 bp
tgactacccatttgcggccaaggaagaagatgaagagagagactcgagaaggtttctgggtcacagagaggtgttgaagtacttgaatgacttcgccggcgagtttgggatttgtgagatggtgaggtttgagactgaagtggtgctcgtgggtttgatggagggtggcaagtggatggtgaagtccaagagcaagaaaggtgaggatttggaagagatttataatgctgtggttgtctgtaatggccattctactgagccccgtgtggcccaaattgaaggtatggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

4.78

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62600 AT1G62600 AT1G62620 AT1G62620 AT1G63370 AT1G63370 AT1G63390
fragaria_vesca FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00210 FvH4_5g00220 FvH4_5g00220 FvH4_5g00230 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36500 FvH4_5g36530 FvH4_5g36860
malus_domestica MD06G1063000.v1.1 MD06G1063100.v1.1
prunus_persica Prupe.5G074800_v2.0.a1 Prupe.5G074900_v2.0.a1 Prupe.8G005000_v2.0.a1
pyrus_communis pycom04g07630 pycom06g06030
rosa_chinensis RchiOBHm_Chr7g0202451 RchiOBHm_Chr7g0202461 RchiOBHm_Chr7g0202471 RchiOBHm_Chr7g0202481 RchiOBHm_Chr7g0202561 RchiOBHm_Chr7g0202571 RchiOBHm_Chr7g0202581 RchiOBHm_Chr7g0202631
rosa_laevigata RLG00000003585 RLG00000003586 RLG00000003588 RLG00000003589 RLG00000003590 RLG00000003594 RLG00000003595 RLG00000003596 RLG00000003597 RLG00000003599 RLG00000003600 RLG00000003601 RLG00000003602 RLG00000029627
rosa_multiflora Rmu_co8483553.1_g000001 Rmu_co8492061.1_g000001 Rmu_sc0000611.1_g000014 Rmu_sc0000611.1_g000020 Rmu_sc0000611.1_g000021 Rmu_sc0001389.1_g000002 Rmu_sc0001389.1_g000004 Rmu_sc0002365.1_g000025 Rmu_sc0031703.1_g000001 Rmu_sc0041226.1_g000001 Rmu_sc0042472.1_g000001 Rmu_sc0042472.1_g000002
rosa_roxburghii Rroxscaffold_3G00254490 Rroxscaffold_3G00254500 Rroxscaffold_3G00254510 Rroxscaffold_3G00254570 Rroxscaffold_3G00254580 Rroxscaffold_3G00254590 Rroxscaffold_3G00254600
rosa_rugosa Rorug07G0070700 Rorug07G0070800 Rorug07G0070900 Rorug07G0071000 Rorug07G0071100 Rorug07G0071300 Rorug07G0071400
rosa_samantha Rh7AG198100 Rh7AG198200 Rh7AG198300 Rh7AG198400 Rh7AG198700 Rh7AG198800 Rh7AG198900 Rh7AG199000 Rh7AG199100 Rh7AG199200 Rh7AG199400 Rh7BG199400 Rh7BG199500 Rh7BG199600 Rh7BG199700 Rh7BG200000 Rh7BG200100 Rh7CG209200 Rh7CG209300 Rh7CG209400 Rh7CG209700 Rh7CG210300 Rh7CG210400 Rh7CG210500 Rh7CG210900 Rh7DG205000 Rh7DG205100 Rh7DG205200 Rh7DG205300 Rh7DG205800 Rh7DG205900 Rh7DG206000 Rh7DG206100 Rh7DG206300
rosa_wichuraiana Rw7G017380 Rw7G017390 Rw7G017400 Rw7G017440 Rw7G017460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 223
AciI CCGC 1 cut(s) 15
AcoI YGGCCR 2 cut(s) 16, 245
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 77, 86, 279
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 34, 126
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 16, 245, 268
ArsI GACNNNNNNTTYG 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 3 cut(s) 134, 191, 213
AvaI CYCGRG 1 cut(s) 44
BalI TGGCCA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 3 cut(s) 113, 152, 170
BcoDI GTCTC 2 cut(s) 34, 126
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 247
BshFI GGCC 3 cut(s) 18, 247, 270
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 34, 126
BsnI GGCC 3 cut(s) 18, 247, 270
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 148, 262
BspACI CCGC 1 cut(s) 15
BspANI GGCC 3 cut(s) 18, 247, 270
BspCNI CTCAG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 19
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 147
Bst6I CTCTTC 2 cut(s) 28, 208
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 34, 126
BsuRI GGCC 3 cut(s) 18, 247, 270
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 4 cut(s) 18, 247, 260, 270
CviKI_1 RGCY 4 cut(s) 18, 247, 260, 270
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 16, 245
Eam1104I CTCTTC 2 cut(s) 28, 208
EarI CTCTTC 2 cut(s) 28, 208
Eco130I CCWWGG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 19
FaiI YATR 2 cut(s) 223, 285
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 3 cut(s) 18, 247, 270
HapII CCGG 1 cut(s) 97
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 97
HphI GGTGA 3 cut(s) 134, 191, 213
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 43, 273
HpyF3I CTNAG 1 cut(s) 256
KroI GCCGGC 1 cut(s) 96
KroNI GCCGGC 1 cut(s) 98
LpnPI CCDG 2 cut(s) 42, 110
MaeIII GTNAC 1 cut(s) 60
MboII GAAGA 4 cut(s) 36, 39, 45, 225
MhlI GDGCHC 2 cut(s) 148, 262
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 1 cut(s) 274
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 4 cut(s) 62, 118, 155, 197
Mox20I TGGCCA 1 cut(s) 247
MreI CGCCGGCG 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 247
Msp20I TGGCCA 1 cut(s) 247
MspI CCGG 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 98
NgoMIV GCCGGC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 223
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SatI GCNGC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 2 cut(s) 148, 262
SetI ASST 5 cut(s) 54, 73, 129, 203, 284
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 274
SsiI CCGC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 274
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 18
TseFI GTSAC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.