FvH4_6g08700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000954
Physical Location & Seq
Forward (+)
5181425 .. 5182955
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08700.t2

Sequence Viewer

Length: 312 bp
ATGAGTTTCAGAACTATGTTGAAAGTGAGTTTCTTGATGTTGCTTGCCATGTCTTTGGCAGCAACTAGTGTTCATGCTCGCTTAGACCTATTTGGCCAGCTGCTTACCTCCAAGAACCAACCACACCCTAATTCTGCAGAAGAATGCCAGAAAATTCCATATCTATTGTGCGGCCGTATCTGTGACGTTTGCTTATGCGATCGGCGTTTACCGGAGTTTTCAGAGTGTACTTGTGGGCAGTGGAAACCGGTTGATGAAGAACTCCAACAATCTGGAGACGCAGGCATAGCCCTCCCAATCCAGCTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

5.56

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 94, 172
AcsI RAATTY 1 cut(s) 153
AfaI GTAC 1 cut(s) 229
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 3 cut(s) 100, 304, 308
AluI AGCT 3 cut(s) 100, 304, 308
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 2 cut(s) 94, 172
ApeKI GCWGC 2 cut(s) 59, 100
ApoI RAATTY 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 96
BbvI GCAGC 2 cut(s) 71, 87
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 270
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 305
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 3 cut(s) 60, 101, 172
BlsI GCNGC 3 cut(s) 61, 102, 173
BmtI GCTAGC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 294
BsaWI WCCGGW 2 cut(s) 211, 247
Bse118I RCCGGY 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 71, 87
Bsh1285I CGRYCG 2 cut(s) 175, 202
BshFI GGCC 2 cut(s) 96, 174
BshTI ACCGGT 1 cut(s) 247
BsiEI CGRYCG 2 cut(s) 175, 202
BsiSI CCGG 2 cut(s) 212, 248
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 96, 174
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 96, 174
BspMAI CTGCAG 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssMI GATC 1 cut(s) 199
BstC8I GCNNGC 5 cut(s) 45, 79, 98, 283, 306
BstDEI CTNAG 2 cut(s) 82, 309
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 2 cut(s) 175, 202
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 71, 87
BstXI CCANNNNNNTGG 2 cut(s) 55, 272
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 96, 174
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 5 cut(s) 45, 79, 98, 283, 306
Cfr10I RCCGGY 1 cut(s) 247
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 2 cut(s) 49, 74
CviJI RGCY 6 cut(s) 96, 100, 174, 290, 304, 308
CviKI_1 RGCY 6 cut(s) 96, 100, 174, 290, 304, 308
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 82, 309
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 2 cut(s) 94, 172
EagI CGGCCG 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 52, 77
FaiI YATR 6 cut(s) 17, 50, 75, 160, 196, 287
FatI CATG 2 cut(s) 48, 73
Fnu4HI GCNGC 3 cut(s) 60, 101, 172
Fsp4HI GCNGC 3 cut(s) 60, 101, 172
FspBI CTAG 2 cut(s) 66, 305
GluI GCNGC 3 cut(s) 60, 101, 172
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 96, 174
HapII CCGG 2 cut(s) 212, 248
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 52, 77
HpaII CCGG 2 cut(s) 212, 248
Hpy166II GTNNAC 2 cut(s) 209, 228
Hpy188I TCNGA 2 cut(s) 11, 223
Hpy188III TCNNGA 2 cut(s) 34, 273
Hpy8I GTNNAC 2 cut(s) 209, 228
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 82, 309
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 52, 77
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 110, 161, 225, 258, 261, 267
Lsp1109I GCAGC 2 cut(s) 71, 87
MaeI CTAG 2 cut(s) 66, 305
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 2 cut(s) 152, 269
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 2 cut(s) 130, 153
MluNI TGGCCA 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 2 cut(s) 118, 302
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 2 cut(s) 212, 248
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 52, 77
NmuCI GTSAC 1 cut(s) 182
PctI GAATGC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 247
PkrI GCNGC 3 cut(s) 61, 102, 173
Ple19I CGATCG 1 cut(s) 202
PstI CTGCAG 1 cut(s) 139
PvuI CGATCG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SatI GCNGC 3 cut(s) 60, 101, 172
Sau3AI GATC 1 cut(s) 199
SetI ASST 6 cut(s) 90, 102, 110, 189, 306, 310
SfcI CTRYAG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 2 cut(s) 130, 153
SsiI CCGC 1 cut(s) 171
SspMI CTAG 2 cut(s) 66, 305
TaiI ACGT 1 cut(s) 189
TasI AATT 2 cut(s) 130, 153
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 174
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 59, 100
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 62, 270
TspRI CASTG 1 cut(s) 245
XapI RAATTY 1 cut(s) 153
XspI CTAG 2 cut(s) 66, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.