Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Forward (+)

7112030 .. 7113221

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTGAGAGTAAGTTTCTTAATGTTGCTTGCCATGGCTTTGACAGCAACTAGTGCTCATGCTCGCCTAGATCTATTTGGCCAGCTGCTCACCTCCAAGGACCAACCAAATCCCAATTCTGAATGCCAGAAAATTCCATTTCTACTATGCGGCCGTGTCTGTGACGCTTGCATTTGCGATAGACGTGCTCCAGAGTTTGCAGAGTGCACTTGCGGACAGTGGAAACCTTATGCAGAACTCCAAAAATCTGGTAATTTAACTAGGCAGAACCCTCCCCAACTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.56

Weight (kDa)

8.21

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 213
AcoI	YGGCCR	2 cut(s)	79, 151
AcsI	RAATTY	1 cut(s)	132
AhlI	ACTAGT	1 cut(s)	50
AjiI	CACGTC	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	2 cut(s)	85, 284
AluI	AGCT	2 cut(s)	85, 284
Alw21I	GWGCWC	3 cut(s)	58, 190, 209
Alw44I	GTGCAC	1 cut(s)	205
AoxI	GGCC	2 cut(s)	79, 151
ApaLI	GTGCAC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	81
Bbv12I	GWGCWC	3 cut(s)	58, 190, 209
BbvI	GCAGC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	4 cut(s)	51, 68, 261, 281
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	2 cut(s)	86, 151
BlsI	GCNGC	2 cut(s)	87, 152
Bme18I	GGWCC	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	33, 96
BseDI	CCNNGG	2 cut(s)	33, 96
BseSI	GKGCMC	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	81, 153
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	3 cut(s)	58, 190, 209
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	81, 153
Bsp1286I	GDGCHC	3 cut(s)	58, 190, 209
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	150, 213
BspANI	GGCC	2 cut(s)	81, 153
BssECI	CCNNGG	2 cut(s)	33, 96
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	33, 96
Bst4CI	ACNGT	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	4 cut(s)	30, 64, 83, 169
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	81, 153
BtgI	CCRYGG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	4 cut(s)	30, 64, 83, 169
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	173
CviAII	CATG	2 cut(s)	34, 59
CviJI	RGCY	5 cut(s)	38, 81, 85, 153, 284
CviKI_1	RGCY	5 cut(s)	38, 81, 85, 153, 284
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	79, 151
EagI	CGGCCG	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	33, 96
Eco47I	GGWCC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	33, 96
ErhI	CCWWGG	2 cut(s)	33, 96
FaeI	CATG	2 cut(s)	37, 62
FaiI	YATR	4 cut(s)	35, 60, 148, 231
FatI	CATG	2 cut(s)	33, 58
Fnu4HI	GCNGC	2 cut(s)	86, 151
Fsp4HI	GCNGC	2 cut(s)	86, 151
FspBI	CTAG	4 cut(s)	51, 68, 261, 281
GluI	GCNGC	2 cut(s)	86, 151
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	81, 153
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	37, 62
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	171, 200, 207, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	37, 62
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	95, 140, 204, 234
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	4 cut(s)	51, 68, 261, 281
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	3 cut(s)	58, 190, 209
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	3 cut(s)	115, 132, 253
MluNI	TGGCCA	1 cut(s)	81
MnlI	CCTC	2 cut(s)	103, 282
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	20, 257
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	37, 62
NmuCI	GTSAC	1 cut(s)	161
PctI	GAATGC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	87, 152
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	20, 257
SatI	GCNGC	2 cut(s)	86, 151
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	58, 190, 209
SetI	ASST	5 cut(s)	87, 95, 187, 229, 286
SinI	GGWCC	1 cut(s)	100
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	3 cut(s)	115, 132, 253
SsiI	CCGC	2 cut(s)	150, 213
SspMI	CTAG	4 cut(s)	51, 68, 261, 281
StyI	CCWWGG	2 cut(s)	33, 96
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	187
TasI	AATT	3 cut(s)	115, 132, 253
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	20, 257
Tru9I	TTAA	2 cut(s)	20, 257
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	161
TspRI	CASTG	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	132
XspI	CTAG	4 cut(s)	51, 68, 261, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.