Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001634.1

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Forward (+)

264351 .. 266261

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001634.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgttgcttgccgtgacattggcagcaactagtgctcatgctcgcttagacctatttggccagctccttacctccaagaaccagccagaccctaattcggagtgcttttgcggaaagtggaaaccatttgcagaactccaaaaatatgacggagcacaagtgcaggtgatagaaaaagaaaaatcagatattgaagttgagtcttcaggcaccattccttatacagagtgcataaaaacttgcgataaatgtttttgtacacgaatgtggccccctgagagcaatgtgtgcatttgcggagacaacaacgagtccaagaagccagttgctttagtccaagaagcgaaaatgagtagcagcaacgtgaaatcagaggtaatgccatattcagaatgccagaaaaactgcaagcatgtatgcgcttgtacactaatttggccacctgaactatcaacgtgcgtttgtggtgactacatcaaatcatcagccaataaagcggccgaagaattgcataaagaattggacttggtctccaagccaattgcaaaatcagtaggaggctttattccatatccggaatgcatcgaaaaatgtgatgagtgtgtaatttgtacaaaaaatttgccaatggagaaagtattgtgctattgtggtaaaaagactgattccgactccaagaagccaacaatcgaatatgcagaaaaattacttccagaattggacgtagccaaaccagttgcaaaatcagtgggaggctttattccatatccagaatgcatagagaaatgtgatgactgtacaatatgtacacttatttatccaattgagagagcattgtgctattgcggtaagaagaccggagctgaagccagagccctccccgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.5

Weight (kDa)

5.49

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	4 cut(s)	111, 297, 497, 846
AcoI	YGGCCR	3 cut(s)	58, 437, 498
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	2 cut(s)	189, 885
AfaI	GTAC	5 cut(s)	259, 427, 613, 799, 808
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	194
AhlI	ACTAGT	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	64, 863
AluI	AGCT	2 cut(s)	64, 863
Alw21I	GWGCWC	2 cut(s)	37, 157
Alw26I	GTCTC	2 cut(s)	294, 535
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	4 cut(s)	58, 269, 437, 498
ApeKI	GCWGC	2 cut(s)	23, 357
ApoI	RAATTY	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	178, 479
BalI	TGGCCA	2 cut(s)	60, 439
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	877
BbsI	GAAGAC	2 cut(s)	195, 860
Bbv12I	GWGCWC	2 cut(s)	37, 157
BbvI	GCAGC	2 cut(s)	35, 369
BcoDI	GTCTC	2 cut(s)	294, 535
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	2 cut(s)	30, 886
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	3 cut(s)	24, 358, 498
BlsI	GCNGC	3 cut(s)	25, 359, 499
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	211, 272
BmsI	GCATC	1 cut(s)	591
BpiI	GAAGAC	2 cut(s)	195, 860
BsaI	GGTCTC	1 cut(s)	535
BsaWI	WCCGGW	2 cut(s)	574, 857
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	323, 734
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	323, 734
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	35, 369
BsgI	GTGCAG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	60, 271, 439, 500
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	37, 157
BsiSI	CCGG	2 cut(s)	575, 858
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	294, 535
BsmI	GAATGC	3 cut(s)	398, 584, 779
BsnI	GGCC	4 cut(s)	60, 271, 439, 500
Bso31I	GGTCTC	1 cut(s)	535
Bsp1286I	GDGCHC	3 cut(s)	37, 157, 877
Bsp13I	TCCGGA	1 cut(s)	574
Bsp1407I	TGTACA	5 cut(s)	257, 425, 611, 797, 806
BspACI	CCGC	4 cut(s)	111, 297, 497, 846
BspANI	GGCC	4 cut(s)	60, 271, 439, 500
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	211, 272
BspMI	ACCTGC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	5 cut(s)	257, 425, 611, 797, 806
BsrI	ACTGG	2 cut(s)	323, 734
Bst4CI	ACNGT	1 cut(s)	797
BstAPI	GCANNNNNTGC	2 cut(s)	32, 288
BstAUI	TGTACA	5 cut(s)	257, 425, 611, 797, 806
BstC8I	GCNNGC	4 cut(s)	9, 43, 62, 410
BstDEI	CTNAG	2 cut(s)	46, 276
BstHHI	GCGC	1 cut(s)	422
BstMAI	GTCTC	2 cut(s)	294, 535
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 288, 494
BstNSI	RCATGY	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	35, 369
BstV2I	GAAGAC	2 cut(s)	195, 860
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	60, 271, 439, 500
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	9, 43, 62, 410
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	270
Csp6I	GTAC	5 cut(s)	258, 426, 612, 798, 807
CspCI	CAANNNNNGTGG	2 cut(s)	729, 764
CviAII	CATG	2 cut(s)	38, 413
CviQI	GTAC	5 cut(s)	258, 426, 612, 798, 807
DdeI	CTNAG	2 cut(s)	46, 276
EaeI	YGGCCR	3 cut(s)	58, 437, 498
EagI	CGGCCG	1 cut(s)	498
EclXI	CGGCCG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	877
Eco31I	GGTCTC	1 cut(s)	535
Eco52I	CGGCCG	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	189, 885
EcoT22I	ATGCAT	2 cut(s)	584, 779
EcoT38I	GRGCYC	1 cut(s)	877
FaeI	CATG	2 cut(s)	41, 416
FatI	CATG	2 cut(s)	37, 412
Fnu4HI	GCNGC	3 cut(s)	24, 358, 498
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	3 cut(s)	24, 358, 498
FspBI	CTAG	2 cut(s)	30, 886
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	3 cut(s)	24, 358, 498
HaeIII	GGCC	4 cut(s)	60, 271, 439, 500
HapII	CCGG	2 cut(s)	575, 858
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	41, 416
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	4 cut(s)	200, 311, 665, 671
HpaII	CCGG	2 cut(s)	575, 858
HphI	GGTGA	2 cut(s)	178, 479
Hpy166II	GTNNAC	3 cut(s)	260, 428, 809
Hpy188I	TCNGA	5 cut(s)	100, 187, 373, 391, 670
Hpy188III	TCNNGA	3 cut(s)	575, 713, 770
Hpy8I	GTNNAC	3 cut(s)	260, 428, 809
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	3 cut(s)	363, 455, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 288, 494
HpyF3I	CTNAG	2 cut(s)	46, 276
HpySE526I	ACGT	3 cut(s)	363, 455, 723
Hsp92II	CATG	2 cut(s)	41, 416
HspAI	GCGC	1 cut(s)	420
Kpn2I	TCCGGA	1 cut(s)	574
LmnI	GCTCC	3 cut(s)	69, 152, 860
Lsp1109I	GCAGC	2 cut(s)	35, 369
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	2 cut(s)	30, 886
MaeII	ACGT	3 cut(s)	363, 455, 723
MaeIII	GTNAC	2 cut(s)	13, 467
MboII	GAAGA	3 cut(s)	195, 515, 865
MfeI	CAATTG	2 cut(s)	540, 822
MhlI	GDGCHC	3 cut(s)	37, 157, 877
MlsI	TGGCCA	2 cut(s)	60, 439
MluNI	TGGCCA	2 cut(s)	60, 439
MlyI	GAGTC	3 cut(s)	209, 320, 665
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	5 cut(s)	82, 367, 551, 746, 887
Mox20I	TGGCCA	2 cut(s)	60, 439
Mph1103I	ATGCAT	2 cut(s)	584, 779
MroI	TCCGGA	1 cut(s)	574
MscI	TGGCCA	2 cut(s)	60, 439
MslI	CAYNNNNRTG	1 cut(s)	265
Msp20I	TGGCCA	2 cut(s)	60, 439
MspI	CCGG	2 cut(s)	575, 858
MunI	CAATTG	2 cut(s)	540, 822
Mva1269I	GAATGC	3 cut(s)	398, 584, 779
MwoI	GCNNNNNNNGC	3 cut(s)	32, 288, 494
NlaIII	CATG	2 cut(s)	41, 416
NlaIV	GGNNCC	2 cut(s)	211, 272
NmuCI	GTSAC	2 cut(s)	13, 467
NsiI	ATGCAT	2 cut(s)	584, 779
NspI	RCATGY	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	154
PctI	GAATGC	3 cut(s)	398, 584, 779
PfeI	GAWTC	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	25, 359, 499
PleI	GAGTC	3 cut(s)	208, 319, 665
PpsI	GAGTC	3 cut(s)	208, 319, 665
PspN4I	GGNNCC	2 cut(s)	211, 272
PspPI	GGNCC	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	5 cut(s)	259, 427, 613, 799, 808
RsaNI	GTAC	5 cut(s)	258, 426, 612, 798, 807
RseI	CAYNNNNRTG	1 cut(s)	265
SatI	GCNGC	3 cut(s)	24, 358, 498
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	3 cut(s)	209, 320, 665
SduI	GDGCHC	3 cut(s)	37, 157, 877
SfaNI	GCATC	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	111, 297, 497, 846
SspMI	CTAG	2 cut(s)	30, 886
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	3 cut(s)	366, 458, 726
TaqI	TCGA	2 cut(s)	585, 690
TatI	WGTACW	5 cut(s)	257, 425, 611, 797, 806
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	665
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	2 cut(s)	13, 467
TseI	GCWGC	2 cut(s)	23, 357
Tsp45I	GTSAC	2 cut(s)	13, 467
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	753
Tth111I	GACNNNGTC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	2 cut(s)	30, 886
Zsp2I	ATGCAT	2 cut(s)	584, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.