Rroxscaffold_4G00322850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000954
Physical Location & Seq
Forward (+)
53402012 .. 53409702
7691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322850.1

Sequence Viewer

Length: 288 bp
ATGGCTTGTTGCTCCAACGGAACTAAAATCAGTTTGAGTCCTTACCACCAAGCAGCATCAAATTCTGAAGAATCTAGAAGAGCTAGTGTTGAAAATGATACTGAGTGTAATGGTGAAGATGAGCGATTTCCATATCTATTGTGCATCCGTATTTGTGACGCTTGCATTTGCGATAAGCGTGCTGCAGAATTTGCAGAGTGCACTTGTGCGAGTGGAAACCAACTGCAGAACGTACTCCGAAAATCTGGAGATGTAGGCATAGCCCTCCCAATCCAGCTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.32

Weight (kDa)

4.84

Isoelectric Point (pI)

63.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 61, 188
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 2 cut(s) 83, 277
AluI AGCT 2 cut(s) 83, 277
Alw21I GWGCWC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 53, 182
ApoI RAATTY 2 cut(s) 61, 188
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 65, 169
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BfaI CTAG 3 cut(s) 75, 84, 286
BfmI CTRYAG 2 cut(s) 183, 224
BisI GCNGC 2 cut(s) 54, 183
BlsI GCNGC 2 cut(s) 55, 184
BmsI GCATC 2 cut(s) 65, 153
BpmI CTGGAG 1 cut(s) 267
BseGI GGATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 65, 169
BsiHKAI GWGCWC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 94
BspMAI CTGCAG 2 cut(s) 187, 228
BspQI GCTCTTC 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 163, 180
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSFI CTRYAG 2 cut(s) 183, 224
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 65, 169
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 163, 180
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 233
CviJI RGCY 4 cut(s) 5, 83, 263, 277
CviKI_1 RGCY 4 cut(s) 5, 83, 263, 277
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 87
FaiI YATR 2 cut(s) 133, 260
Fnu4HI GCNGC 2 cut(s) 54, 183
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 54, 183
FspBI CTAG 3 cut(s) 75, 84, 286
GluI GCNGC 2 cut(s) 54, 183
GsuI CTGGAG 1 cut(s) 267
HgaI GACGC 1 cut(s) 167
HinfI GANTC 2 cut(s) 37, 71
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 201, 283
Hpy188I TCNGA 2 cut(s) 67, 239
Hpy188III TCNNGA 2 cut(s) 75, 246
Hpy8I GTNNAC 2 cut(s) 201, 283
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 6 cut(s) 144, 165, 185, 194, 201, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 231
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 65, 169
LweI GCATC 2 cut(s) 65, 153
MaeI CTAG 3 cut(s) 75, 84, 286
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 3 cut(s) 80, 90, 128
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 61, 188
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 55, 184
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PstI CTGCAG 2 cut(s) 187, 228
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 73
SatI GCNGC 2 cut(s) 54, 183
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 203
SetI ASST 3 cut(s) 85, 234, 279
SfaNI GCATC 2 cut(s) 65, 153
SfcI CTRYAG 2 cut(s) 183, 224
SgeI CNNG 9 cut(s) 18, 62, 87, 96, 174, 191, 216, 222, 258
Sse9I AATT 2 cut(s) 61, 188
SspMI CTAG 3 cut(s) 75, 84, 286
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 61, 188
TfiI GAWTC 1 cut(s) 71
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 53, 182
Tsp45I GTSAC 1 cut(s) 155
TspGWI ACGGA 2 cut(s) 33, 137
VneI GTGCAC 1 cut(s) 199
XapI RAATTY 2 cut(s) 61, 188
XbaI TCTAGA 1 cut(s) 74
XspI CTAG 3 cut(s) 75, 84, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.