RchiOBHm_Chr3g0458891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000954
Physical Location & Seq
Forward (+)
7461865 .. 7463448
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42551

Sequence Viewer

Length: 447 bp
ATGTTGAGAGTAGGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTCACCTCCAAGAACCAACCAAATCCCAATTCAGAATGCCAGAAAATTCCATTTCTACTATGCGACCGTGTCTGTGACGTTTGCGTTTGCGATAGACGTGCTCCAGAGTTTGCAGAGTGCTTTTGCGGACAGTGGAAACCTTATGCAGAACTTCAAAAATCTGGTGCAGACGAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTAAAGCCAAGTCTTCGGGCGCCATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACAAATGTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCAACACTGAAGCTGAAGGCAGAGCCCTCCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

6.55

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 2 cut(s) 213, 409
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 2 cut(s) 132, 354
AcuI CTGAAG 2 cut(s) 438, 444
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 50
AjiI CACGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 2 cut(s) 85, 422
AluI AGCT 2 cut(s) 85, 422
Alw21I GWGCWC 2 cut(s) 58, 190
AoxI GGCC 2 cut(s) 79, 377
ApeKI GCWGC 2 cut(s) 44, 85
ApoI RAATTY 2 cut(s) 132, 354
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 82, 286
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 2 cut(s) 58, 190
BbvI GCAGC 2 cut(s) 56, 72
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 445
BfoI RGCGCY 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 45, 86, 409
BlsI GCNGC 3 cut(s) 46, 87, 410
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 319, 380
BmsI GCATC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 56, 72
BsgI GTGCAG 2 cut(s) 273, 290
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 81, 379
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 58, 190
BsmI GAATGC 2 cut(s) 128, 341
BsnI GGCC 2 cut(s) 81, 379
Bsp1286I GDGCHC 3 cut(s) 58, 190, 436
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 2 cut(s) 213, 409
BspANI GGCC 2 cut(s) 81, 379
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 319, 380
BspMI ACCTGC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 155, 219
BstACI GRCGYC 1 cut(s) 318
BstAPI GCANNNNNTGC 2 cut(s) 53, 405
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 30, 64, 83
BstDEI CTNAG 2 cut(s) 67, 384
BstDSI CCRYGG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 260, 405
BstV1I GCAGC 2 cut(s) 56, 72
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 81, 379
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 224, 414
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 3 cut(s) 30, 64, 83
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 34, 59
CviJI RGCY 7 cut(s) 38, 81, 85, 305, 379, 422, 434
CviKI_1 RGCY 7 cut(s) 38, 81, 85, 305, 379, 422, 434
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 67, 384
DinI GGCGCC 1 cut(s) 319
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 438, 444
Eco81I CCTNAGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 436
EgeI GGCGCC 1 cut(s) 319
EheI GGCGCC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 62
FaiI YATR 6 cut(s) 35, 60, 148, 231, 328, 330
FatI CATG 2 cut(s) 33, 58
Fnu4HI GCNGC 3 cut(s) 45, 86, 409
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 3 cut(s) 45, 86, 409
FspBI CTAG 2 cut(s) 51, 445
GlaI GCGC 1 cut(s) 319
GluI GCNGC 3 cut(s) 45, 86, 409
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 2 cut(s) 81, 379
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 2 cut(s) 37, 62
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HphI GGTGA 2 cut(s) 82, 286
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 155, 219
HpyCH4IV ACGT 2 cut(s) 165, 184
HpyCH4V TGCA 7 cut(s) 200, 233, 254, 271, 339, 351, 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 260, 405
HpyF3I CTNAG 2 cut(s) 67, 384
HpySE526I ACGT 2 cut(s) 165, 184
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 2 cut(s) 37, 62
HspAI GCGC 1 cut(s) 318
KasI GGCGCC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 95, 140, 204, 234, 257, 396
Lsp1109I GCAGC 2 cut(s) 56, 72
LweI GCATC 1 cut(s) 348
MaeI CTAG 2 cut(s) 51, 445
MaeII ACGT 2 cut(s) 165, 184
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 285, 303
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 58, 190, 436
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 4 cut(s) 115, 132, 354, 391
MluNI TGGCCA 1 cut(s) 81
Mly113I GGCGCC 1 cut(s) 318
MnlI CCTC 3 cut(s) 103, 379, 446
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 341
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 20, 300
MslI CAYNNNNRTG 1 cut(s) 373
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 85
Mva1269I GAATGC 2 cut(s) 128, 341
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 260, 405
NarI GGCGCC 1 cut(s) 318
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 37, 62
NlaIV GGNNCC 2 cut(s) 319, 380
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 341
OliI CACNNNNGTG 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 262
PctI GAATGC 2 cut(s) 128, 341
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 46, 87, 410
PluTI GGCGCC 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 319, 380
PspPI GGNCC 1 cut(s) 378
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 20, 300
SatI GCNGC 3 cut(s) 45, 86, 409
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 378
SduI GDGCHC 3 cut(s) 58, 190, 436
SetI ASST 8 cut(s) 16, 87, 95, 168, 187, 229, 276, 424
SfaNI GCATC 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 373
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 4 cut(s) 115, 132, 354, 391
SsiI CCGC 2 cut(s) 213, 409
SspDI GGCGCC 1 cut(s) 317
SspMI CTAG 2 cut(s) 51, 445
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 155, 219
TaiI ACGT 2 cut(s) 168, 187
TasI AATT 4 cut(s) 115, 132, 354, 391
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 411
Tru1I TTAA 2 cut(s) 20, 300
Tru9I TTAA 2 cut(s) 20, 300
TscAI CASTG 2 cut(s) 224, 421
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 44, 85
Tsp45I GTSAC 1 cut(s) 161
TspRI CASTG 2 cut(s) 224, 421
Tth111I GACNNNGTC 1 cut(s) 155
XapI RAATTY 2 cut(s) 132, 354
XspI CTAG 2 cut(s) 51, 445
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.