Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

41867718 .. 41870481

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGTAGCAGCAACGTGAAATCAGAGATAATGCCATATTCAGAATGCCAGAAAACCTGCAAGCATGTTTGCTCTTGTACACTAATTTGGCCACCTGAACTATCAACGTGCATTTGTGGTGACTTCATCAAATCATCAACCACAGAAGTCGCCGTGGCTAAAGTGGGGGAGTATCGGCATTATTGGATCCGTGTGTACGGGACTCATTTGCCGCTTCCACACAACAAGTGGTATCGAGCCCGAGGTTACGCTTGGGACTTGGTGTCTCATACGGTCGAGTTGCAATTTGGAGGAGTTGCTTTGTTTGGATTGGGATCACAAGATTTAGAATTGGATGCTTGTGGTCAAGGTGGAGCTATTGGAATTCGGATCATGAGACAATTGAAGATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.63

Weight (kDa)

8.17

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	4 cut(s)	181, 194, 322, 377
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	2 cut(s)	79, 197
AgsI	TTSAA	1 cut(s)	385
AhdI	GACNNNNNGTC	1 cut(s)	262
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	270, 370
AlwI	GGATC	4 cut(s)	181, 194, 322, 377
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	270, 370
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	10, 212
BlsI	GCNGC	2 cut(s)	11, 213
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	153, 241
Bse8I	GATNNNNATC	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	153, 241
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	214, 269
BsmAI	GTCTC	2 cut(s)	270, 370
BsmFI	GGGAC	2 cut(s)	214, 269
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	186, 314, 369
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	4 cut(s)	181, 194, 322, 377
BsrGI	TGTACA	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	153, 241
BssMI	GATC	3 cut(s)	186, 314, 369
Bst4CI	ACNGT	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	189, 317, 372
BstMAI	GTCTC	2 cut(s)	270, 370
BstMBI	GATC	3 cut(s)	186, 314, 369
BstMCI	CGRYCG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	78, 196
CviAII	CATG	2 cut(s)	65, 373
CviJI	RGCY	5 cut(s)	91, 158, 239, 356, 392
CviKI_1	RGCY	5 cut(s)	91, 158, 239, 356, 392
CviQI	GTAC	2 cut(s)	78, 196
DpnI	GATC	3 cut(s)	188, 316, 371
DpnII	GATC	3 cut(s)	186, 314, 369
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	2 cut(s)	68, 376
FaiI	YATR	4 cut(s)	37, 66, 270, 374
FaqI	GGGAC	2 cut(s)	214, 269
FatI	CATG	2 cut(s)	64, 372
Fnu4HI	GCNGC	2 cut(s)	10, 212
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	2 cut(s)	10, 212
GluI	GCNGC	2 cut(s)	10, 212
HaeIII	GGCC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	68, 376
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	80, 196
Hpy188I	TCNGA	3 cut(s)	25, 43, 369
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	80, 196
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	15, 107
HpyCH4V	TGCA	3 cut(s)	60, 111, 283
HpySE526I	ACGT	2 cut(s)	15, 107
Hsp92II	CATG	2 cut(s)	68, 376
Kzo9I	GATC	3 cut(s)	186, 314, 369
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	3 cut(s)	62, 70, 108
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	2 cut(s)	15, 107
MaeIII	GTNAC	2 cut(s)	119, 245
MalI	GATC	3 cut(s)	188, 316, 371
MboI	GATC	3 cut(s)	186, 314, 369
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	5 cut(s)	84, 284, 329, 363, 380
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	236, 284
Mox20I	TGGCCA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	91
Msp20I	TGGCCA	1 cut(s)	91
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	186, 314, 369
NlaIII	CATG	2 cut(s)	68, 376
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	1 cut(s)	372
PctI	GAATGC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	11, 213
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	79, 197
RsaNI	GTAC	2 cut(s)	78, 196
SatI	GCNGC	2 cut(s)	10, 212
Sau3AI	GATC	3 cut(s)	186, 314, 369
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	18, 59, 97, 110, 247, 352, 358
SfaNI	GCATC	1 cut(s)	325
Sse9I	AATT	5 cut(s)	84, 284, 329, 363, 380
SsiI	CCGC	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	18, 110
TaqI	TCGA	2 cut(s)	235, 276
TasI	AATT	5 cut(s)	84, 284, 329, 363, 380
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	179
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.