Rh3DG094000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000954
Physical Location & Seq
Forward (+)
7397428 .. 7399887
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG094000.1

Sequence Viewer

Length: 1026 bp
ATGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCGTGACATTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAGCCAGACCCTAATTCGGAATGCCAGAAAATTCCATTTCTATTGTGCGACCGTATCTGTGACGCTTGCGTTTGCGATAGGCGTGTGGCACAAGCTGCAGAGTGCTTTTGCGGAAAGTGGAAACCATTTGCAGAACTCCAGAAATATGACGGAGCACAAGTGCAGGTGATAGAAAAAGAAAAATCAAATATTGCAGTTGAGTCTTCAGGCGCCATTCCATATACAGAATGCATCAAAACTTGCGACAAATGTTTTTGTACACAAAAGTGGCCCCCTGAGAGCAATGTGTGCATTTGCGGAGACAACATGTCCAACAAGTCCAAGAAGCCAGTTGTTTTGGTTCAAGAAGAGAAACTGATTAGCAACAAACTGAAATCAGAGACGATGCCATATTCAGAATGCCAGAAAACCTGCACGCATGTTTGTGCTTGTACAGCAATTTGGCCACCTGAACTAGCAATCTGCGTTTGTGGTGACCCCATCAAATCAGTAACCACTAAAGCGGCCGAACTCGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGTGTAATTTGCACTTTGCCTTATCCAATTGAGTTTGCATTATGCTATTGTGGTAAAAAGACTGATTCTGACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTGCTTACAGAATTACACGTAGCCAAACCAGTTGCAAAATCAGTGGGTGGCTTTATTCCATATCCGGAATGCATAGAGAAATGTGATGAGTGTGTAATTTGCACTAGACCTCTTCCAATTGAGGCTGCATTATGCTATTGCGGTAAGAAGACCGAATCTGAAGGCAGAGCCCTCCCCCGTCTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

37.58

Weight (kDa)

7.58

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 2 cut(s) 295, 560
AccB1I GGYRCC 1 cut(s) 350
AccIII TCCGGA 2 cut(s) 706, 901
AciI CCGC 5 cut(s) 252, 438, 644, 830, 978
AcoI YGGCCR 3 cut(s) 118, 584, 645
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 2 cut(s) 330, 1017
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 2 cut(s) 400, 574
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 2 cut(s) 447, 853
AgsI TTSAA 4 cut(s) 22, 46, 485, 719
AhdI GACNNNNNGTC 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 3 cut(s) 124, 236, 1022
AluI AGCT 3 cut(s) 124, 236, 1022
Alw21I GWGCWC 2 cut(s) 97, 298
Alw26I GTCTC 3 cut(s) 435, 515, 667
Aor13HI TCCGGA 2 cut(s) 706, 901
AoxI GGCC 4 cut(s) 118, 410, 584, 645
ApeKI GCWGC 3 cut(s) 83, 236, 962
ApoI RAATTY 1 cut(s) 171
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 319, 626
BalI TGGCCA 2 cut(s) 120, 586
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 1009
BbsI GAAGAC 2 cut(s) 336, 992
Bbv12I GWGCWC 2 cut(s) 97, 298
BbvI GCAGC 3 cut(s) 95, 223, 949
BccI CCATC 1 cut(s) 629
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 3 cut(s) 435, 515, 667
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 4 cut(s) 90, 596, 942, 1019
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 354
BfuAI ACCTGC 2 cut(s) 295, 560
BisI GCNGC 4 cut(s) 84, 237, 645, 963
BlsI GCNGC 4 cut(s) 85, 238, 646, 964
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 2 cut(s) 352, 413
BmsI GCATC 2 cut(s) 381, 516
BpiI GAAGAC 2 cut(s) 336, 992
BpmI CTGGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 856
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 667
BsaWI WCCGGW 2 cut(s) 706, 901
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 647, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 470, 671, 866
Bse3DI GCAATG 1 cut(s) 430
BseAI TCCGGA 2 cut(s) 706, 901
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 3 cut(s) 470, 671, 866
BseX3I CGGCCG 1 cut(s) 645
BseXI GCAGC 3 cut(s) 95, 223, 949
BsgI GTGCAG 2 cut(s) 323, 538
Bsh1285I CGRYCG 2 cut(s) 193, 648
BshFI GGCC 4 cut(s) 120, 412, 586, 647
BshNI GGYRCC 1 cut(s) 350
BsiEI CGRYCG 2 cut(s) 193, 648
BsiHKAI GWGCWC 2 cut(s) 97, 298
BsiSI CCGG 2 cut(s) 707, 902
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 3 cut(s) 435, 515, 667
BsmBI CGTCTC 1 cut(s) 515
BsmI GAATGC 5 cut(s) 167, 374, 545, 716, 911
BsnI GGCC 4 cut(s) 120, 412, 586, 647
Bso31I GGTCTC 1 cut(s) 667
Bsp1286I GDGCHC 3 cut(s) 97, 298, 1009
Bsp13I TCCGGA 2 cut(s) 706, 901
Bsp1407I TGTACA 2 cut(s) 398, 572
BspACI CCGC 5 cut(s) 252, 438, 644, 830, 978
BspANI GGCC 4 cut(s) 120, 412, 586, 647
BspCNI CTCAG 1 cut(s) 409
BspEI TCCGGA 2 cut(s) 706, 901
BspLI GGNNCC 2 cut(s) 352, 413
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 2 cut(s) 295, 560
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 430
BsrGI TGTACA 2 cut(s) 398, 572
BsrI ACTGG 3 cut(s) 470, 671, 866
BssNI GRCGYC 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 483, 954
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 3 cut(s) 92, 236, 429
BstAUI TGTACA 2 cut(s) 398, 572
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 5 cut(s) 69, 103, 122, 208, 557
BstDEI CTNAG 3 cut(s) 106, 417, 1023
BstEII GGTNACC 1 cut(s) 614
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 1 cut(s) 353
BstMAI GTCTC 3 cut(s) 435, 515, 667
BstMCI CGRYCG 2 cut(s) 193, 648
BstMWI GCNNNNNNNGC 4 cut(s) 92, 236, 429, 575
BstNSI RCATGY 2 cut(s) 451, 563
BstPI GGTNACC 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 95, 223, 949
BstV2I GAAGAC 2 cut(s) 336, 992
BstZI CGGCCG 1 cut(s) 645
BsuRI GGCC 4 cut(s) 120, 412, 586, 647
BtsIMutI CAGTG 2 cut(s) 690, 885
BveI ACCTGC 2 cut(s) 295, 560
Cac8I GCNNGC 5 cut(s) 69, 103, 122, 208, 557
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 399, 573
CspCI CAANNNNNGTGG 4 cut(s) 666, 701, 861, 896
CviAII CATG 3 cut(s) 98, 448, 560
CviQI GTAC 2 cut(s) 399, 573
DdeI CTNAG 3 cut(s) 106, 417, 1023
DinI GGCGCC 1 cut(s) 352
DriI GACNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 3 cut(s) 118, 584, 645
EagI CGGCCG 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 483, 954
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 2 cut(s) 483, 954
EclXI CGGCCG 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 667
Eco52I CGGCCG 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 330, 1017
Eco91I GGTNACC 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 614
EcoT22I ATGCAT 3 cut(s) 374, 716, 911
EcoT38I GRGCYC 1 cut(s) 1009
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 3 cut(s) 101, 451, 563
FatI CATG 3 cut(s) 97, 447, 559
Fnu4HI GCNGC 4 cut(s) 84, 237, 645, 963
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 4 cut(s) 84, 237, 645, 963
FspBI CTAG 4 cut(s) 90, 596, 942, 1019
GlaI GCGC 1 cut(s) 352
GluI GCNGC 4 cut(s) 84, 237, 645, 963
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 4 cut(s) 120, 412, 586, 647
HapII CCGG 2 cut(s) 707, 902
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 3 cut(s) 101, 451, 563
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 4 cut(s) 341, 797, 803, 992
HpaII CCGG 2 cut(s) 707, 902
HphI GGTGA 2 cut(s) 319, 626
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 7 cut(s) 11, 35, 160, 520, 538, 802, 997
Hpy188III TCNNGA 4 cut(s) 280, 485, 707, 902
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 992
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 855
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 236, 429, 575
HpyF3I CTNAG 3 cut(s) 106, 417, 1023
HpySE526I ACGT 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 3 cut(s) 101, 451, 563
HspAI GCGC 1 cut(s) 351
KasI GGCGCC 1 cut(s) 350
Kpn2I TCCGGA 2 cut(s) 706, 901
LmnI GCTCC 2 cut(s) 129, 293
Lsp1109I GCAGC 3 cut(s) 95, 223, 949
LweI GCATC 2 cut(s) 381, 516
MaeI CTAG 4 cut(s) 90, 596, 942, 1019
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 5 cut(s) 73, 200, 614, 631, 725
MboII GAAGA 4 cut(s) 336, 500, 941, 997
MfeI CAATTG 2 cut(s) 759, 954
MhlI GDGCHC 3 cut(s) 97, 298, 1009
MlsI TGGCCA 2 cut(s) 120, 586
MluCI AATT 9 cut(s) 154, 171, 579, 738, 759, 836, 848, 933, 954
MluNI TGGCCA 2 cut(s) 120, 586
Mly113I GGCGCC 1 cut(s) 351
MlyI GAGTC 2 cut(s) 350, 797
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 5 cut(s) 142, 683, 952, 957, 1019
Mox20I TGGCCA 2 cut(s) 120, 586
Mph1103I ATGCAT 3 cut(s) 374, 716, 911
MroI TCCGGA 2 cut(s) 706, 901
MscI TGGCCA 2 cut(s) 120, 586
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 2 cut(s) 406, 564
Msp20I TGGCCA 2 cut(s) 120, 586
MspI CCGG 2 cut(s) 707, 902
MunI CAATTG 2 cut(s) 759, 954
Mva1269I GAATGC 5 cut(s) 167, 374, 545, 716, 911
MwoI GCNNNNNNNGC 4 cut(s) 92, 236, 429, 575
NarI GGCGCC 1 cut(s) 351
NlaIII CATG 3 cut(s) 101, 451, 563
NlaIV GGNNCC 2 cut(s) 352, 413
NmuCI GTSAC 4 cut(s) 73, 200, 614, 725
NsiI ATGCAT 3 cut(s) 374, 716, 911
NspI RCATGY 2 cut(s) 451, 563
OliI CACNNNNGTG 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 295
PciI ACATGT 1 cut(s) 447
PctI GAATGC 5 cut(s) 167, 374, 545, 716, 911
PfeI GAWTC 2 cut(s) 797, 992
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 4 cut(s) 85, 238, 646, 964
PleI GAGTC 2 cut(s) 349, 797
PluTI GGCGCC 1 cut(s) 354
PpsI GAGTC 2 cut(s) 349, 797
Ppu21I YACGTR 1 cut(s) 856
PscI ACATGT 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 614
PspN4I GGNNCC 2 cut(s) 352, 413
PspPI GGNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 2 cut(s) 400, 574
RsaNI GTAC 2 cut(s) 399, 573
RseI CAYNNNNRTG 2 cut(s) 406, 564
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 4 cut(s) 84, 237, 645, 963
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 2 cut(s) 350, 797
SduI GDGCHC 3 cut(s) 97, 298, 1009
SfaNI GCATC 2 cut(s) 381, 516
SfcI CTRYAG 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 406, 564
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 9 cut(s) 154, 171, 579, 738, 759, 836, 848, 933, 954
SsiI CCGC 5 cut(s) 252, 438, 644, 830, 978
SspDI GGCGCC 1 cut(s) 350
SspI AATATT 1 cut(s) 331
SspMI CTAG 4 cut(s) 90, 596, 942, 1019
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 858
TaqI TCGA 2 cut(s) 654, 822
TaqII GACCGA 1 cut(s) 1004
TasI AATT 9 cut(s) 154, 171, 579, 738, 759, 836, 848, 933, 954
TatI WGTACW 2 cut(s) 398, 572
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 797, 992
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 690, 885
TseFI GTSAC 4 cut(s) 73, 200, 614, 725
TseI GCWGC 3 cut(s) 83, 236, 962
Tsp45I GTSAC 4 cut(s) 73, 200, 614, 725
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 690, 885
Tth111I GACNNNGTC 1 cut(s) 659
XapI RAATTY 1 cut(s) 171
XceI RCATGY 2 cut(s) 451, 563
XspI CTAG 4 cut(s) 90, 596, 942, 1019
Zsp2I ATGCAT 3 cut(s) 374, 716, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.