Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Forward (+)

35357674 .. 35360251

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGGTTAGATCTATTTGGTCACCAGCTGCTTACCTCCAAGAGCCAACTAGATCCCAATTCTGAAGAAGCGGAGATGCTCAAATCAGCAACCACTCAAATGGCCGAAAAATTGATGAATGCAGCAGCTGTAGTCCAAGAAGAGAAACCGAGCAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGTTACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCCTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGTTACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCAGGATCAAACAAATTATCAACCACTAAAGAAGCCGAAAAATTGCAGAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCAATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGCATAGCCCTCCCGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

34.19

Weight (kDa)

5.36

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	272, 467, 662
AccIII	TCCGGA	1 cut(s)	823
AciI	CCGC	4 cut(s)	131, 356, 551, 884
AclWI	GGATC	4 cut(s)	107, 337, 532, 727
AcoI	YGGCCR	6 cut(s)	162, 296, 357, 491, 552, 686
AcsI	RAATTY	2 cut(s)	364, 559
AcuI	CTGAAG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	3 cut(s)	275, 470, 665
AgsI	TTSAA	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	778
AjnI	CCWGG	3 cut(s)	255, 450, 645
AluBI	AGCT	5 cut(s)	88, 188, 380, 575, 810
AluI	AGCT	5 cut(s)	88, 188, 380, 575, 810
AlwI	GGATC	4 cut(s)	107, 337, 532, 727
AlwNI	CAGNNNCTG	3 cut(s)	188, 383, 578
Aor13HI	TCCGGA	1 cut(s)	823
AoxI	GGCC	6 cut(s)	162, 296, 357, 491, 552, 686
ApoI	RAATTY	2 cut(s)	364, 559
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	1 cut(s)	74
BalI	TGGCCA	3 cut(s)	298, 493, 688
BccI	CCATC	1 cut(s)	919
BciT130I	CCWGG	3 cut(s)	257, 452, 647
BcnI	CCSGG	1 cut(s)	941
BfaI	CTAG	3 cut(s)	110, 864, 946
BfmI	CTRYAG	3 cut(s)	189, 384, 579
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	3 cut(s)	272, 467, 662
BglII	AGATCT	1 cut(s)	70
Bme1390I	CCNGG	4 cut(s)	257, 452, 647, 941
BmeRI	GACNNNNNGTC	1 cut(s)	778
BmrFI	CCNGG	4 cut(s)	257, 452, 647, 941
BmsI	GCATC	2 cut(s)	126, 840
Bpu10I	CCTNAGC	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	941
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	823
Bse1I	ACTGG	1 cut(s)	788
BseAI	TCCGGA	1 cut(s)	823
BseBI	CCWGG	3 cut(s)	257, 452, 647
BseDI	CCNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	788
BseX3I	CGGCCG	2 cut(s)	357, 552
BsgI	GTGCAG	2 cut(s)	735, 844
Bsh1285I	CGRYCG	2 cut(s)	360, 555
BshFI	GGCC	6 cut(s)	164, 298, 359, 493, 554, 688
BsiEI	CGRYCG	2 cut(s)	360, 555
BsiSI	CCGG	2 cut(s)	824, 941
BsmI	GAATGC	5 cut(s)	184, 257, 452, 647, 833
BsnI	GGCC	6 cut(s)	164, 298, 359, 493, 554, 688
Bsp13I	TCCGGA	1 cut(s)	823
Bsp143I	GATC	5 cut(s)	70, 112, 329, 524, 719
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	4 cut(s)	131, 356, 551, 884
BspANI	GGCC	6 cut(s)	164, 298, 359, 493, 554, 688
BspEI	TCCGGA	1 cut(s)	823
BspMI	ACCTGC	3 cut(s)	272, 467, 662
BspPI	GGATC	4 cut(s)	107, 337, 532, 727
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	5 cut(s)	70, 112, 329, 524, 719
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	257, 452, 647
Bst4CI	ACNGT	3 cut(s)	315, 510, 705
Bst6I	CTCTTC	3 cut(s)	195, 390, 585
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	30, 378, 573
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	80
BstKTI	GATC	5 cut(s)	73, 115, 332, 527, 722
BstMBI	GATC	5 cut(s)	70, 112, 329, 524, 719
BstMCI	CGRYCG	2 cut(s)	360, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 900
BstNI	CCWGG	3 cut(s)	257, 452, 647
BstNSI	RCATGY	3 cut(s)	279, 474, 669
BstPI	GGTNACC	1 cut(s)	80
BstSCI	CCNGG	4 cut(s)	255, 450, 645, 939
BstSFI	CTRYAG	3 cut(s)	189, 384, 579
BstX2I	RGATCY	2 cut(s)	70, 112
BstXI	CCANNNNNNTGG	2 cut(s)	40, 160
BstYI	RGATCY	2 cut(s)	70, 112
BstZI	CGGCCG	2 cut(s)	357, 552
BsuRI	GGCC	6 cut(s)	164, 298, 359, 493, 554, 688
BtgI	CCRYGG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	320, 515, 710
BveI	ACCTGC	3 cut(s)	272, 467, 662
Cac8I	GCNNGC	3 cut(s)	30, 378, 573
CaiI	CAGNNNCTG	3 cut(s)	188, 383, 578
CviAII	CATG	6 cut(s)	34, 59, 276, 471, 666, 904
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	5 cut(s)	72, 114, 331, 526, 721
DpnII	GATC	5 cut(s)	70, 112, 329, 524, 719
DriI	GACNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	6 cut(s)	162, 296, 357, 491, 552, 686
EagI	CGGCCG	2 cut(s)	357, 552
Eam1104I	CTCTTC	3 cut(s)	195, 390, 585
Eam1105I	GACNNNNNGTC	1 cut(s)	778
EarI	CTCTTC	3 cut(s)	195, 390, 585
EclXI	CGGCCG	2 cut(s)	357, 552
Eco130I	CCWWGG	1 cut(s)	33
Eco52I	CGGCCG	2 cut(s)	357, 552
Eco57I	CTGAAG	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	80
EcoRII	CCWGG	3 cut(s)	255, 450, 645
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	833
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	6 cut(s)	37, 62, 279, 474, 669, 907
FatI	CATG	6 cut(s)	33, 58, 275, 470, 665, 903
FspBI	CTAG	3 cut(s)	110, 864, 946
HaeIII	GGCC	6 cut(s)	164, 298, 359, 493, 554, 688
HapII	CCGG	2 cut(s)	824, 941
Hin1II	CATG	6 cut(s)	37, 62, 279, 474, 669, 907
HindIII	AAGCTT	1 cut(s)	808
HinfI	GANTC	1 cut(s)	907
HpaII	CCGG	2 cut(s)	824, 941
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	124, 250, 445, 640, 921
Hpy188III	TCNNGA	1 cut(s)	824
HpyAV	CCTTC	2 cut(s)	757, 797
HpyCH4III	ACNGT	3 cut(s)	315, 510, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 900
HpyF3I	CTNAG	1 cut(s)	567
Hsp92II	CATG	6 cut(s)	37, 62, 279, 474, 669, 907
Kpn2I	TCCGGA	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	70, 112, 329, 524, 719
LweI	GCATC	2 cut(s)	126, 840
MaeI	CTAG	3 cut(s)	110, 864, 946
MaeIII	GTNAC	3 cut(s)	80, 427, 622
MalI	GATC	5 cut(s)	72, 114, 331, 526, 721
MboI	GATC	5 cut(s)	70, 112, 329, 524, 719
MboII	GAAGA	5 cut(s)	137, 212, 407, 602, 806
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	2 cut(s)	70, 112
MlsI	TGGCCA	3 cut(s)	298, 493, 688
MluNI	TGGCCA	3 cut(s)	298, 493, 688
MnlI	CCTC	3 cut(s)	106, 874, 947
Mox20I	TGGCCA	3 cut(s)	298, 493, 688
Mph1103I	ATGCAT	1 cut(s)	833
MroI	TCCGGA	1 cut(s)	823
MscI	TGGCCA	3 cut(s)	298, 493, 688
MseI	TTAA	2 cut(s)	20, 372
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	3 cut(s)	298, 493, 688
MspA1I	CMGCKG	4 cut(s)	88, 188, 380, 575
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	824, 941
MspR9I	CCNGG	4 cut(s)	257, 452, 647, 941
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	5 cut(s)	184, 257, 452, 647, 833
MvaI	CCWGG	3 cut(s)	257, 452, 647
MwoI	GCNNNNNNNGC	2 cut(s)	44, 900
NciI	CCSGG	1 cut(s)	941
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	70, 112, 329, 524, 719
NlaIII	CATG	6 cut(s)	37, 62, 279, 474, 669, 907
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	833
NspI	RCATGY	3 cut(s)	279, 474, 669
PciI	ACATGT	3 cut(s)	275, 470, 665
PctI	GAATGC	5 cut(s)	184, 257, 452, 647, 833
PfeI	GAWTC	1 cut(s)	907
PscI	ACATGT	3 cut(s)	275, 470, 665
Psp6I	CCWGG	3 cut(s)	255, 450, 645
PspEI	GGTNACC	1 cut(s)	80
PspGI	CCWGG	3 cut(s)	255, 450, 645
PstNI	CAGNNNCTG	3 cut(s)	188, 383, 578
PsuI	RGATCY	2 cut(s)	70, 112
PvuII	CAGCTG	4 cut(s)	88, 188, 380, 575
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	20, 372
Sau3AI	GATC	5 cut(s)	70, 112, 329, 524, 719
ScrFI	CCNGG	4 cut(s)	257, 452, 647, 941
SfaNI	GCATC	2 cut(s)	126, 840
SfcI	CTRYAG	3 cut(s)	189, 384, 579
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SsiI	CCGC	4 cut(s)	131, 356, 551, 884
SspMI	CTAG	3 cut(s)	110, 864, 946
StyD4I	CCNGG	4 cut(s)	255, 450, 645, 939
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	315, 510, 705
TaqI	TCGA	1 cut(s)	834
TauI	GCSGC	3 cut(s)	359, 554, 887
TfiI	GAWTC	1 cut(s)	907
Tru1I	TTAA	2 cut(s)	20, 372
Tru9I	TTAA	2 cut(s)	20, 372
TscAI	CASTG	3 cut(s)	320, 515, 710
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	191, 920
TspRI	CASTG	3 cut(s)	320, 515, 710
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	364, 559
XceI	RCATGY	3 cut(s)	279, 474, 669
XspI	CTAG	3 cut(s)	110, 864, 946
Zsp2I	ATGCAT	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.