Rw2G029850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000954
Physical Location & Seq
Reverse (-)
48430139 .. 48433019
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029850.1

Sequence Viewer

Length: 1263 bp
ATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCAGATCCCAATTATGAAAAATTGATGAAGGCAACAGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAAGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATCTGTGCTGGATCAAGCAAATTATCAACCACTAATGCGGCCGAAAATTTGCTTAAACCAGCTGCTGTAGTACAAGAAGAGAAACCGAGTAGCAGCATAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGCTGCGAGTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATCTGTGCTGGATCAAGCAAATTATCAACCACTAATGCGGCCGAAAATTTGCTTAAACCAGCTGTTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAACCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAAGCACAATTCCATATTCTGAATGCCAGGAAACCTGCAACTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGTTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAAATTGCATAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCGATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGCATAGCCCTCCCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

45.45

Weight (kDa)

5.12

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 977
AccI GTMKAC 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 1138
AciI CCGC 6 cut(s) 281, 476, 671, 866, 1061, 1199
AclWI GGATC 6 cut(s) 74, 262, 457, 652, 847, 1042
AcsI RAATTY 4 cut(s) 289, 484, 679, 874
AfaI GTAC 1 cut(s) 315
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 5 cut(s) 200, 395, 590, 785, 980
AhdI GACNNNNNGTC 1 cut(s) 1093
AjnI CCWGG 4 cut(s) 375, 570, 765, 960
AluBI AGCT 8 cut(s) 55, 113, 305, 384, 500, 695, 890, 1125
AluI AGCT 8 cut(s) 55, 113, 305, 384, 500, 695, 890, 1125
AlwI GGATC 6 cut(s) 74, 262, 457, 652, 847, 1042
AlwNI CAGNNNCTG 3 cut(s) 308, 503, 893
Aor13HI TCCGGA 1 cut(s) 1138
ApoI RAATTY 4 cut(s) 289, 484, 679, 874
BalI TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
BccI CCATC 1 cut(s) 1234
BciT130I CCWGG 4 cut(s) 377, 572, 767, 962
BfaI CTAG 2 cut(s) 1179, 1261
BfmI CTRYAG 4 cut(s) 114, 309, 504, 894
BfrI CTTAAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 977
BglII AGATCT 1 cut(s) 37
Bme1390I CCNGG 4 cut(s) 377, 572, 767, 962
BmeRI GACNNNNNGTC 1 cut(s) 1093
BmrFI CCNGG 4 cut(s) 377, 572, 767, 962
BmsI GCATC 3 cut(s) 252, 642, 1155
BsaWI WCCGGW 1 cut(s) 1138
Bse1I ACTGG 1 cut(s) 1103
BseAI TCCGGA 1 cut(s) 1138
BseBI CCWGG 4 cut(s) 377, 572, 767, 962
BseNI ACTGG 1 cut(s) 1103
BseX3I CGGCCG 5 cut(s) 282, 477, 672, 867, 1062
BseYI CCCAGC 1 cut(s) 886
BsgI GTGCAG 1 cut(s) 1159
Bsh1285I CGRYCG 5 cut(s) 285, 480, 675, 870, 1065
BsiEI CGRYCG 5 cut(s) 285, 480, 675, 870, 1065
BsiSI CCGG 1 cut(s) 1139
BsmI GAATGC 6 cut(s) 182, 377, 572, 767, 962, 1148
Bsp13I TCCGGA 1 cut(s) 1138
Bsp143I GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
BspACI CCGC 6 cut(s) 281, 476, 671, 866, 1061, 1199
BspEI TCCGGA 1 cut(s) 1138
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 6 cut(s) 74, 262, 457, 652, 847, 1042
BspTI CTTAAG 1 cut(s) 491
BsrI ACTGG 1 cut(s) 1103
BssMI GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
BssNAI GTATAC 1 cut(s) 393
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 4 cut(s) 377, 572, 767, 962
Bst4CI ACNGT 5 cut(s) 240, 435, 630, 825, 1020
Bst6I CTCTTC 5 cut(s) 120, 315, 510, 705, 900
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 31, 498, 937, 988
BstDEI CTNAG 1 cut(s) 34
BstKTI GATC 7 cut(s) 40, 82, 257, 452, 647, 842, 1037
BstMBI GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
BstMCI CGRYCG 5 cut(s) 285, 480, 675, 870, 1065
BstMWI GCNNNNNNNGC 3 cut(s) 11, 381, 1215
BstNI CCWGG 4 cut(s) 377, 572, 767, 962
BstNSI RCATGY 5 cut(s) 204, 399, 594, 789, 984
BstSCI CCNGG 4 cut(s) 375, 570, 765, 960
BstSFI CTRYAG 4 cut(s) 114, 309, 504, 894
BstX2I RGATCY 2 cut(s) 37, 79
BstYI RGATCY 2 cut(s) 37, 79
BstZ17I GTATAC 1 cut(s) 393
BstZI CGGCCG 5 cut(s) 282, 477, 672, 867, 1062
BtsIMutI CAGTG 5 cut(s) 245, 440, 635, 830, 1025
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 4 cut(s) 31, 498, 937, 988
CaiI CAGNNNCTG 3 cut(s) 308, 503, 893
Csp6I GTAC 1 cut(s) 314
CviAII CATG 7 cut(s) 26, 201, 396, 591, 786, 981, 1219
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 34
DpnI GATC 7 cut(s) 39, 81, 256, 451, 646, 841, 1036
DpnII GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
DriI GACNNNNNGTC 1 cut(s) 1093
EagI CGGCCG 5 cut(s) 282, 477, 672, 867, 1062
Eam1104I CTCTTC 5 cut(s) 120, 315, 510, 705, 900
Eam1105I GACNNNNNGTC 1 cut(s) 1093
EarI CTCTTC 5 cut(s) 120, 315, 510, 705, 900
EclXI CGGCCG 5 cut(s) 282, 477, 672, 867, 1062
Eco52I CGGCCG 5 cut(s) 282, 477, 672, 867, 1062
EcoRII CCWGG 4 cut(s) 375, 570, 765, 960
EcoT22I ATGCAT 1 cut(s) 1148
FaeI CATG 7 cut(s) 29, 204, 399, 594, 789, 984, 1222
FatI CATG 7 cut(s) 25, 200, 395, 590, 785, 980, 1218
FblI GTMKAC 1 cut(s) 392
FspBI CTAG 2 cut(s) 1179, 1261
GsaI CCCAGC 1 cut(s) 890
HapII CCGG 1 cut(s) 1139
Hin1II CATG 7 cut(s) 29, 204, 399, 594, 789, 984, 1222
HindIII AAGCTT 1 cut(s) 1123
HinfI GANTC 1 cut(s) 1222
HpaII CCGG 1 cut(s) 1139
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 7 cut(s) 175, 370, 565, 760, 955, 1191, 1236
Hpy188III TCNNGA 1 cut(s) 1139
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 2 cut(s) 97, 1112
HpyCH4III ACNGT 5 cut(s) 240, 435, 630, 825, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 381, 1215
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 7 cut(s) 29, 204, 399, 594, 789, 984, 1222
Kpn2I TCCGGA 1 cut(s) 1138
Kzo9I GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
LweI GCATC 3 cut(s) 252, 642, 1155
MaeI CTAG 2 cut(s) 1179, 1261
MalI GATC 7 cut(s) 39, 81, 256, 451, 646, 841, 1036
MboI GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
MboII GAAGA 6 cut(s) 137, 332, 527, 722, 917, 1121
MflI RGATCY 2 cut(s) 37, 79
MlsI TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
MluNI TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
MmeI TCCRAC 1 cut(s) 1012
MnlI CCTC 3 cut(s) 73, 1189, 1262
Mox20I TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
Mph1103I ATGCAT 1 cut(s) 1148
MroI TCCGGA 1 cut(s) 1138
MscI TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
MseI TTAA 4 cut(s) 297, 492, 687, 882
Msp20I TGGCCA 6 cut(s) 48, 223, 418, 613, 808, 1003
MspA1I CMGCKG 6 cut(s) 55, 113, 305, 500, 695, 890
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 1139
MspR9I CCNGG 4 cut(s) 377, 572, 767, 962
Mva1269I GAATGC 6 cut(s) 182, 377, 572, 767, 962, 1148
MvaI CCWGG 4 cut(s) 377, 572, 767, 962
MwoI GCNNNNNNNGC 3 cut(s) 11, 381, 1215
NdeII GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
NlaIII CATG 7 cut(s) 29, 204, 399, 594, 789, 984, 1222
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 5 cut(s) 204, 399, 594, 789, 984
PciI ACATGT 5 cut(s) 200, 395, 590, 785, 980
PctI GAATGC 6 cut(s) 182, 377, 572, 767, 962, 1148
PfeI GAWTC 1 cut(s) 1222
PscI ACATGT 5 cut(s) 200, 395, 590, 785, 980
Psp6I CCWGG 4 cut(s) 375, 570, 765, 960
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 4 cut(s) 375, 570, 765, 960
PstNI CAGNNNCTG 3 cut(s) 308, 503, 893
PsuI RGATCY 2 cut(s) 37, 79
PvuII CAGCTG 6 cut(s) 55, 113, 305, 500, 695, 890
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 4 cut(s) 297, 492, 687, 882
Sau3AI GATC 7 cut(s) 37, 79, 254, 449, 644, 839, 1034
ScrFI CCNGG 4 cut(s) 377, 572, 767, 962
SfaNI GCATC 3 cut(s) 252, 642, 1155
SfcI CTRYAG 4 cut(s) 114, 309, 504, 894
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 6 cut(s) 281, 476, 671, 866, 1061, 1199
SspMI CTAG 2 cut(s) 1179, 1261
StyD4I CCNGG 4 cut(s) 375, 570, 765, 960
TaaI ACNGT 5 cut(s) 240, 435, 630, 825, 1020
TaqI TCGA 1 cut(s) 1149
TatI WGTACW 1 cut(s) 313
TauI GCSGC 6 cut(s) 284, 479, 674, 869, 1064, 1202
TfiI GAWTC 1 cut(s) 1222
Tru1I TTAA 4 cut(s) 297, 492, 687, 882
Tru9I TTAA 4 cut(s) 297, 492, 687, 882
TscAI CASTG 5 cut(s) 245, 440, 635, 830, 1025
TspDTI ATGAA 3 cut(s) 105, 116, 1235
TspRI CASTG 5 cut(s) 245, 440, 635, 830, 1025
Vha464I CTTAAG 1 cut(s) 491
XapI RAATTY 4 cut(s) 289, 484, 679, 874
XceI RCATGY 5 cut(s) 204, 399, 594, 789, 984
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 2 cut(s) 1179, 1261
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.