Rh3DG093900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000954
Physical Location & Seq
Forward (+)
7349917 .. 7375292
25376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG093900.1

Sequence Viewer

Length: 1005 bp
ATGAGTTTCAAAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGACTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAACCAGACCCTAATTATGAATGCCAGAAAATTCCATTTCTACTGTGTGGCCGTATATGTGACTCATGCACCTGCGATAGGCGTGTGCCAGAGCTTGCAGAGTGCACTTGTTCACAGTGGAAACCATTTGCAGCACTCCAAAAATCTGACGAAGCACATGTGCAGGTGATAGAAAAAGAAAAATCTGCTATTCAAGTTGAGTCTTCAGGGACCATTCCATATACAGAGTGCATAAAAACTTGCGATAAATGTTTTTGTACACTAAAGTGGCCCCCTGAGAGCAATGTGTGCTTTTGCGGAGACAACAAGAAGTCCAAGAAGCCAGTTGCTTTAGTCCAAGAAGCGAAAATGAGTAGCAGCAACGTGAAGTCAGAGATAACGCCATATTCAGAATGCCAGAAAAACTGCAAGCATGTATGCGCTTGTACACCAATTTGGCCACCTGAACTATCAACGTGCATTTGTGGTGACTACATCAAATCATCAGCCAATAAAGCGGCCGAAGAATTGCATAAAGAATTGGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTAGGAGGCTTTATTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATTTGTACAAAAAATTTGCCAATGGAGAAAGTATTGTGCTATTGTGGTAAAAAGACTGATTCCGACTCCAAGAAGCCAACAATCGAATATGCAGAAAAATTACTTCCAGAATTGGACGTAGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCAGAATGCATAGAGAAATGTGATGAGTGTACAATATGTACACTTATTTATCCAATTGAGAAAGCATTGTGCTATTGCGGTAAGAAGACCGGAGCTGAAGCCAGAGCCCTCCCCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.9

Weight (kDa)

7.25

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 197, 271
Acc36I ACCTGC 2 cut(s) 197, 271
AccIII TCCGGA 1 cut(s) 691
AciI CCGC 3 cut(s) 414, 614, 963
AcoI YGGCCR 4 cut(s) 94, 166, 554, 615
AcsI RAATTY 2 cut(s) 147, 736
AcuI CTGAAG 2 cut(s) 306, 1002
AfaI GTAC 5 cut(s) 376, 544, 730, 916, 925
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 10, 22, 311
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 3 cut(s) 100, 211, 980
AluI AGCT 3 cut(s) 100, 211, 980
Alw21I GWGCWC 2 cut(s) 73, 224
Alw26I GTCTC 2 cut(s) 411, 652
Alw44I GTGCAC 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 691
AoxI GGCC 5 cut(s) 94, 166, 386, 554, 615
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 59, 248, 474
ApoI RAATTY 2 cut(s) 147, 736
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 327, 387
AsuHPI GGTGA 2 cut(s) 295, 596
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 2 cut(s) 96, 556
BanII GRGCYC 1 cut(s) 994
BbsI GAAGAC 2 cut(s) 312, 977
Bbv12I GWGCWC 2 cut(s) 73, 224
BbvI GCAGC 3 cut(s) 71, 260, 486
BceAI ACGGC 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 411, 652
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 1003
BfuAI ACCTGC 2 cut(s) 197, 271
BisI GCNGC 4 cut(s) 60, 249, 475, 615
BlsI GCNGC 4 cut(s) 61, 250, 476, 616
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 327, 387
BmiI GGNNCC 2 cut(s) 328, 389
BmsI GCATC 1 cut(s) 708
BpiI GAAGAC 2 cut(s) 312, 977
BsaI GGTCTC 1 cut(s) 652
BsaWI WCCGGW 2 cut(s) 691, 974
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 3 cut(s) 440, 656, 851
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 691
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 3 cut(s) 440, 656, 851
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 71, 260, 486
BsgI GTGCAG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 618
BshFI GGCC 5 cut(s) 96, 168, 388, 556, 617
BsiEI CGRYCG 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 73, 224
BsiSI CCGG 2 cut(s) 692, 975
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 411, 652
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 4 cut(s) 143, 515, 701, 896
BsnI GGCC 5 cut(s) 96, 168, 388, 556, 617
Bso31I GGTCTC 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 73, 224, 994
Bsp13I TCCGGA 1 cut(s) 691
Bsp1407I TGTACA 5 cut(s) 374, 542, 728, 914, 923
BspACI CCGC 3 cut(s) 414, 614, 963
BspANI GGCC 5 cut(s) 96, 168, 388, 556, 617
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 328, 389
BspMI ACCTGC 2 cut(s) 197, 271
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 5 cut(s) 374, 542, 728, 914, 923
BsrI ACTGG 3 cut(s) 440, 656, 851
Bst4CI ACNGT 2 cut(s) 162, 234
BstAPI GCANNNNNTGC 2 cut(s) 68, 405
BstAUI TGTACA 5 cut(s) 374, 542, 728, 914, 923
BstC8I GCNNGC 5 cut(s) 45, 79, 98, 213, 527
BstDEI CTNAG 2 cut(s) 82, 393
BstENI CCTNNNNNAGG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 539
BstMAI GTCTC 2 cut(s) 411, 652
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 3 cut(s) 68, 405, 611
BstNSI RCATGY 2 cut(s) 278, 533
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 71, 260, 486
BstV2I GAAGAC 2 cut(s) 312, 977
BstXI CCANNNNNNTGG 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 5 cut(s) 96, 168, 388, 556, 617
BtsIMutI CAGTG 2 cut(s) 239, 870
BveI ACCTGC 2 cut(s) 197, 271
Cac8I GCNNGC 5 cut(s) 45, 79, 98, 213, 527
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 327, 387
Csp6I GTAC 5 cut(s) 375, 543, 729, 915, 924
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CviAII CATG 5 cut(s) 49, 74, 183, 275, 530
CviQI GTAC 5 cut(s) 375, 543, 729, 915, 924
DdeI CTNAG 2 cut(s) 82, 393
EaeI YGGCCR 4 cut(s) 94, 166, 554, 615
EagI CGGCCG 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 994
Eco31I GGTCTC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 306, 1002
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoT22I ATGCAT 2 cut(s) 701, 896
EcoT38I GRGCYC 1 cut(s) 994
FaeI CATG 5 cut(s) 52, 77, 186, 278, 533
FaqI GGGAC 1 cut(s) 340
FatI CATG 5 cut(s) 48, 73, 182, 274, 529
Fnu4HI GCNGC 4 cut(s) 60, 249, 475, 615
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 4 cut(s) 60, 249, 475, 615
FspBI CTAG 2 cut(s) 66, 1003
GlaI GCGC 1 cut(s) 538
GluI GCNGC 4 cut(s) 60, 249, 475, 615
HaeIII GGCC 5 cut(s) 96, 168, 388, 556, 617
HapII CCGG 2 cut(s) 692, 975
HhaI GCGC 1 cut(s) 539
Hin1II CATG 5 cut(s) 52, 77, 186, 278, 533
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HinfI GANTC 4 cut(s) 179, 317, 782, 788
HpaII CCGG 2 cut(s) 692, 975
HphI GGTGA 2 cut(s) 295, 596
Hpy166II GTNNAC 6 cut(s) 222, 230, 377, 545, 915, 926
Hpy188I TCNGA 4 cut(s) 265, 490, 508, 787
Hpy188III TCNNGA 3 cut(s) 692, 830, 887
Hpy8I GTNNAC 6 cut(s) 222, 230, 377, 545, 915, 926
HpyCH4III ACNGT 2 cut(s) 162, 234
HpyCH4IV ACGT 3 cut(s) 480, 572, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 405, 611
HpyF3I CTNAG 2 cut(s) 82, 393
HpySE526I ACGT 3 cut(s) 480, 572, 840
Hsp92II CATG 5 cut(s) 52, 77, 186, 278, 533
HspAI GCGC 1 cut(s) 537
Kpn2I TCCGGA 1 cut(s) 691
LmnI GCTCC 2 cut(s) 105, 977
Lsp1109I GCAGC 3 cut(s) 71, 260, 486
LweI GCATC 1 cut(s) 708
MaeI CTAG 2 cut(s) 66, 1003
MaeII ACGT 3 cut(s) 480, 572, 840
MaeIII GTNAC 2 cut(s) 176, 584
MboII GAAGA 3 cut(s) 312, 632, 982
MfeI CAATTG 1 cut(s) 939
MhlI GDGCHC 3 cut(s) 73, 224, 994
MlsI TGGCCA 2 cut(s) 96, 556
MluNI TGGCCA 2 cut(s) 96, 556
MlyI GAGTC 3 cut(s) 173, 326, 782
MmeI TCCRAC 1 cut(s) 810
MnlI CCTC 4 cut(s) 118, 668, 863, 1004
Mox20I TGGCCA 2 cut(s) 96, 556
Mph1103I ATGCAT 2 cut(s) 701, 896
MroI TCCGGA 1 cut(s) 691
MscI TGGCCA 2 cut(s) 96, 556
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 2 cut(s) 96, 556
MspI CCGG 2 cut(s) 692, 975
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 4 cut(s) 143, 515, 701, 896
MwoI GCNNNNNNNGC 3 cut(s) 68, 405, 611
NlaIII CATG 5 cut(s) 52, 77, 186, 278, 533
NlaIV GGNNCC 2 cut(s) 328, 389
NmuCI GTSAC 2 cut(s) 176, 584
NsiI ATGCAT 2 cut(s) 701, 896
NspI RCATGY 2 cut(s) 278, 533
OliI CACNNNNGTG 1 cut(s) 382
PaqCI CACCTGC 2 cut(s) 197, 271
PciI ACATGT 1 cut(s) 274
PctI GAATGC 4 cut(s) 143, 515, 701, 896
PfeI GAWTC 1 cut(s) 782
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 4 cut(s) 61, 250, 476, 616
PleI GAGTC 3 cut(s) 173, 325, 782
PpsI GAGTC 3 cut(s) 173, 325, 782
PscI ACATGT 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 328, 389
PspPI GGNCC 2 cut(s) 327, 387
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 5 cut(s) 376, 544, 730, 916, 925
RsaNI GTAC 5 cut(s) 375, 543, 729, 915, 924
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 4 cut(s) 60, 249, 475, 615
Sau96I GGNCC 2 cut(s) 327, 387
SchI GAGTC 3 cut(s) 173, 326, 782
SduI GDGCHC 3 cut(s) 73, 224, 994
SfaNI GCATC 1 cut(s) 708
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 3 cut(s) 414, 614, 963
SspMI CTAG 2 cut(s) 66, 1003
TaaI ACNGT 2 cut(s) 162, 234
TaiI ACGT 3 cut(s) 483, 575, 843
TaqI TCGA 2 cut(s) 702, 807
TatI WGTACW 5 cut(s) 374, 542, 728, 914, 923
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 1 cut(s) 782
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 239, 870
TseFI GTSAC 2 cut(s) 176, 584
TseI GCWGC 3 cut(s) 59, 248, 474
Tsp45I GTSAC 2 cut(s) 176, 584
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 2 cut(s) 239, 870
Tth111I GACNNNGTC 1 cut(s) 644
VneI GTGCAC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 2 cut(s) 147, 736
XceI RCATGY 2 cut(s) 278, 533
XspI CTAG 2 cut(s) 66, 1003
Zsp2I ATGCAT 2 cut(s) 701, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.