Rh2BG372500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000954
Physical Location & Seq
Reverse (-)
52127300 .. 52130556
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG372500.1

Sequence Viewer

Length: 1311 bp
ATGAGTTTCAGAAATATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCAGATCCCAATTATGAAAAATTGATGAAGGCAGCAGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTAAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATCTGTGCTGGATCAAGCAAATTATCAACCACTAATGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCATAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGCTGCGAGTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGACACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGTTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGTTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCAAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGACACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGTTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAAATTGCATAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCGATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGCATAGCCCTCCCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

47.34

Weight (kDa)

5.57

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 635, 1025
AccI GTMKAC 1 cut(s) 440
AccIII TCCGGA 1 cut(s) 1186
AciI CCGC 6 cut(s) 329, 524, 719, 914, 1109, 1247
AclWI GGATC 6 cut(s) 122, 310, 505, 700, 895, 1090
AcsI RAATTY 4 cut(s) 337, 532, 727, 922
AflII CTTAAG 4 cut(s) 344, 539, 734, 929
AflIII ACRYGT 5 cut(s) 248, 443, 638, 833, 1028
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 1141
AjnI CCWGG 5 cut(s) 228, 423, 618, 813, 1008
AluBI AGCT 7 cut(s) 103, 161, 353, 432, 548, 938, 1173
AluI AGCT 7 cut(s) 103, 161, 353, 432, 548, 938, 1173
AlwI GGATC 6 cut(s) 122, 310, 505, 700, 895, 1090
AlwNI CAGNNNCTG 5 cut(s) 161, 356, 551, 746, 941
Aor13HI TCCGGA 1 cut(s) 1186
ApoI RAATTY 4 cut(s) 337, 532, 727, 922
BalI TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
BccI CCATC 1 cut(s) 1282
BciT130I CCWGG 5 cut(s) 230, 425, 620, 815, 1010
BfaI CTAG 2 cut(s) 1227, 1309
BfmI CTRYAG 5 cut(s) 162, 357, 552, 747, 942
BfrI CTTAAG 4 cut(s) 344, 539, 734, 929
BfuAI ACCTGC 2 cut(s) 635, 1025
BglII AGATCT 1 cut(s) 85
Bme1390I CCNGG 5 cut(s) 230, 425, 620, 815, 1010
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmrFI CCNGG 5 cut(s) 230, 425, 620, 815, 1010
BmsI GCATC 2 cut(s) 300, 1203
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 1186
Bse1I ACTGG 2 cut(s) 740, 1151
BseAI TCCGGA 1 cut(s) 1186
BseBI CCWGG 5 cut(s) 230, 425, 620, 815, 1010
BseDI CCNNGG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 740, 1151
BseX3I CGGCCG 4 cut(s) 330, 525, 720, 1110
BsgI GTGCAG 1 cut(s) 1207
Bsh1285I CGRYCG 4 cut(s) 333, 528, 723, 1113
BsiEI CGRYCG 4 cut(s) 333, 528, 723, 1113
BsiSI CCGG 1 cut(s) 1187
BsmI GAATGC 6 cut(s) 230, 425, 620, 815, 1010, 1196
Bsp13I TCCGGA 1 cut(s) 1186
Bsp143I GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 6 cut(s) 329, 524, 719, 914, 1109, 1247
BspEI TCCGGA 1 cut(s) 1186
BspMI ACCTGC 2 cut(s) 635, 1025
BspPI GGATC 6 cut(s) 122, 310, 505, 700, 895, 1090
BspTI CTTAAG 4 cut(s) 344, 539, 734, 929
BsrI ACTGG 2 cut(s) 740, 1151
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
BssNAI GTATAC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 5 cut(s) 230, 425, 620, 815, 1010
Bst4CI ACNGT 5 cut(s) 288, 483, 678, 873, 1068
Bst6I CTCTTC 5 cut(s) 168, 363, 558, 753, 948
BstAFI CTTAAG 4 cut(s) 344, 539, 734, 929
BstC8I GCNNGC 7 cut(s) 45, 79, 351, 546, 646, 936, 1036
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 7 cut(s) 88, 130, 305, 500, 695, 890, 1085
BstMBI GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
BstMCI CGRYCG 4 cut(s) 333, 528, 723, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 59, 429, 1263
BstNI CCWGG 5 cut(s) 230, 425, 620, 815, 1010
BstNSI RCATGY 5 cut(s) 252, 447, 642, 837, 1032
BstSCI CCNGG 5 cut(s) 228, 423, 618, 813, 1008
BstSFI CTRYAG 5 cut(s) 162, 357, 552, 747, 942
BstX2I RGATCY 2 cut(s) 85, 127
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 2 cut(s) 85, 127
BstZ17I GTATAC 1 cut(s) 441
BstZI CGGCCG 4 cut(s) 330, 525, 720, 1110
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 5 cut(s) 293, 488, 683, 878, 1073
BveI ACCTGC 2 cut(s) 635, 1025
Cac8I GCNNGC 7 cut(s) 45, 79, 351, 546, 646, 936, 1036
CaiI CAGNNNCTG 5 cut(s) 161, 356, 551, 746, 941
CviAII CATG 8 cut(s) 49, 74, 249, 444, 639, 834, 1029, 1267
DdeI CTNAG 1 cut(s) 82
DpnI GATC 7 cut(s) 87, 129, 304, 499, 694, 889, 1084
DpnII GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
DriI GACNNNNNGTC 1 cut(s) 1141
EagI CGGCCG 4 cut(s) 330, 525, 720, 1110
Eam1104I CTCTTC 5 cut(s) 168, 363, 558, 753, 948
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EarI CTCTTC 5 cut(s) 168, 363, 558, 753, 948
EclXI CGGCCG 4 cut(s) 330, 525, 720, 1110
Eco130I CCWWGG 1 cut(s) 48
Eco52I CGGCCG 4 cut(s) 330, 525, 720, 1110
EcoRII CCWGG 5 cut(s) 228, 423, 618, 813, 1008
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 1196
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 8 cut(s) 52, 77, 252, 447, 642, 837, 1032, 1270
FatI CATG 8 cut(s) 48, 73, 248, 443, 638, 833, 1028, 1266
FblI GTMKAC 1 cut(s) 440
FspBI CTAG 2 cut(s) 1227, 1309
HapII CCGG 1 cut(s) 1187
Hin1II CATG 8 cut(s) 52, 77, 252, 447, 642, 837, 1032, 1270
HindIII AAGCTT 1 cut(s) 1171
HinfI GANTC 1 cut(s) 1270
HpaII CCGG 1 cut(s) 1187
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 8 cut(s) 11, 223, 418, 613, 808, 1003, 1239, 1284
Hpy188III TCNNGA 1 cut(s) 1187
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 2 cut(s) 145, 1160
HpyCH4III ACNGT 5 cut(s) 288, 483, 678, 873, 1068
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 429, 1263
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 8 cut(s) 52, 77, 252, 447, 642, 837, 1032, 1270
Kpn2I TCCGGA 1 cut(s) 1186
Kzo9I GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
LweI GCATC 2 cut(s) 300, 1203
MaeI CTAG 2 cut(s) 1227, 1309
MalI GATC 7 cut(s) 87, 129, 304, 499, 694, 889, 1084
MboI GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
MboII GAAGA 6 cut(s) 185, 380, 575, 770, 965, 1169
MflI RGATCY 2 cut(s) 85, 127
MlsI TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
MluNI TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
MmeI TCCRAC 2 cut(s) 670, 1060
MnlI CCTC 3 cut(s) 121, 1237, 1310
Mox20I TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
Mph1103I ATGCAT 1 cut(s) 1196
MroI TCCGGA 1 cut(s) 1186
MscI TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
MseI TTAA 5 cut(s) 35, 345, 540, 735, 930
Msp20I TGGCCA 6 cut(s) 96, 271, 466, 661, 856, 1051
MspA1I CMGCKG 5 cut(s) 103, 161, 353, 548, 938
MspCI CTTAAG 4 cut(s) 344, 539, 734, 929
MspI CCGG 1 cut(s) 1187
MspR9I CCNGG 5 cut(s) 230, 425, 620, 815, 1010
Mva1269I GAATGC 6 cut(s) 230, 425, 620, 815, 1010, 1196
MvaI CCWGG 5 cut(s) 230, 425, 620, 815, 1010
MwoI GCNNNNNNNGC 3 cut(s) 59, 429, 1263
NcoI CCATGG 1 cut(s) 48
NdeII GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
NlaIII CATG 8 cut(s) 52, 77, 252, 447, 642, 837, 1032, 1270
NsiI ATGCAT 1 cut(s) 1196
NspI RCATGY 5 cut(s) 252, 447, 642, 837, 1032
PciI ACATGT 5 cut(s) 248, 443, 638, 833, 1028
PctI GAATGC 6 cut(s) 230, 425, 620, 815, 1010, 1196
PfeI GAWTC 1 cut(s) 1270
PscI ACATGT 5 cut(s) 248, 443, 638, 833, 1028
Psp6I CCWGG 5 cut(s) 228, 423, 618, 813, 1008
PspGI CCWGG 5 cut(s) 228, 423, 618, 813, 1008
PstNI CAGNNNCTG 5 cut(s) 161, 356, 551, 746, 941
PsuI RGATCY 2 cut(s) 85, 127
PvuII CAGCTG 5 cut(s) 103, 161, 353, 548, 938
SaqAI TTAA 5 cut(s) 35, 345, 540, 735, 930
Sau3AI GATC 7 cut(s) 85, 127, 302, 497, 692, 887, 1082
ScrFI CCNGG 5 cut(s) 230, 425, 620, 815, 1010
SfaNI GCATC 2 cut(s) 300, 1203
SfcI CTRYAG 5 cut(s) 162, 357, 552, 747, 942
SmlI CTYRAG 4 cut(s) 344, 539, 734, 929
SmoI CTYRAG 4 cut(s) 344, 539, 734, 929
SsiI CCGC 6 cut(s) 329, 524, 719, 914, 1109, 1247
SspMI CTAG 2 cut(s) 1227, 1309
StyD4I CCNGG 5 cut(s) 228, 423, 618, 813, 1008
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 5 cut(s) 288, 483, 678, 873, 1068
TaqI TCGA 1 cut(s) 1197
TauI GCSGC 6 cut(s) 332, 527, 722, 917, 1112, 1250
TfiI GAWTC 1 cut(s) 1270
Tru1I TTAA 5 cut(s) 35, 345, 540, 735, 930
Tru9I TTAA 5 cut(s) 35, 345, 540, 735, 930
TscAI CASTG 5 cut(s) 293, 488, 683, 878, 1073
TspDTI ATGAA 3 cut(s) 153, 164, 1283
TspRI CASTG 5 cut(s) 293, 488, 683, 878, 1073
Vha464I CTTAAG 4 cut(s) 344, 539, 734, 929
XapI RAATTY 4 cut(s) 337, 532, 727, 922
XceI RCATGY 5 cut(s) 252, 447, 642, 837, 1032
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 2 cut(s) 1227, 1309
Zsp2I ATGCAT 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.